Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.2e-244 849.4 403 100.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 2.7e-177 625.5 388 73.2
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.3e-176 622.5 399 73.9
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 4.1e-173 611.7 388 72.9
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.5e-167 593.2 394 70.3
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 5.7e-167 591.3 389 71.5
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 7.5e-167 590.9 393 70.2
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.8e-166 589.0 390 69.5
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.1e-165 585.5 389 69.2
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.5e-164 582.0 388 68.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.9e-163 578.9 388 69.8
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 5.0e-163 578.2 389 69.2
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.5e-162 576.6 393 67.4
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.5e-162 575.9 400 67.0
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.5e-162 575.9 390 68.7
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.2e-162 574.3 395 67.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.2e-161 573.5 394 67.5
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 3.6e-161 572.0 391 68.3
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 3.6e-161 572.0 390 67.4
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.0e-160 570.5 389 67.6
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.4e-160 570.1 391 68.5
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 4.4e-159 565.1 390 66.2
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.7e-158 563.1 388 66.5
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.7e-158 563.1 394 67.3
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.2e-158 562.8 393 66.4
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.2e-158 562.8 391 67.0
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.8e-158 562.4 390 66.7
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.8e-158 562.4 390 67.2
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 6.3e-158 561.2 390 66.9
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 8.3e-158 560.8 384 68.0
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.1e-157 560.5 391 65.7
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.8e-157 559.7 390 66.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.8e-157 559.7 388 67.0
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.8e-157 559.7 388 67.0
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.8e-157 559.7 388 67.0
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.1e-157 558.5 384 68.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 5.4e-157 558.1 395 66.6
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 7.0e-157 557.8 384 68.0
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.2e-156 557.0 390 65.6
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.6e-156 556.6 393 66.2
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.5e-156 555.4 390 66.7
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.8e-155 552.0 378 68.0
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 5.0e-155 551.6 389 65.0
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.5e-154 550.1 382 65.7
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.9e-154 549.7 390 65.9
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.5e-154 549.3 388 65.7
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.5e-154 549.3 385 66.5
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 3.3e-154 548.9 399 65.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.3e-154 548.5 385 66.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.6e-153 546.6 392 64.8
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.6e-153 546.6 391 64.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.6e-153 546.6 385 66.0
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.6e-153 546.6 385 65.7
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.6e-153 546.6 384 66.7
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.6e-153 546.6 378 67.5
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 2.1e-153 546.2 393 64.1
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 4.7e-153 545.0 390 64.1
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.4e-152 543.5 404 63.1
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.0e-152 542.3 391 63.4
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 5.2e-152 541.6 393 64.1
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.2e-152 541.6 385 66.5
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 8.9e-152 540.8 393 64.1
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.2e-151 540.4 391 62.1
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.6e-151 539.3 393 63.6
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.4e-151 538.9 398 64.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 5.7e-151 538.1 397 64.2
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.3e-150 537.0 393 64.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.3e-150 537.0 393 64.1
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.7e-150 536.6 396 64.1
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 1.7e-150 536.6 393 64.1
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.7e-150 536.6 389 63.8
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.2e-150 536.2 385 65.7
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 2.9e-150 535.8 391 62.7
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 2.9e-150 535.8 396 64.1
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 3.7e-150 535.4 396 64.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 3.7e-150 535.4 396 64.1
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 3.7e-150 535.4 396 64.1
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.1e-149 533.9 385 65.5
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.1e-149 533.9 391 61.6
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.1e-149 533.9 404 61.1
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.8e-149 533.1 394 62.2
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.4e-149 532.7 389 62.5
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 3.2e-149 532.3 391 61.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 5.4e-149 531.6 396 61.9
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.7e-148 529.3 386 64.2
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.7e-148 529.3 383 64.8
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 5.9e-148 528.1 393 62.1
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.0e-147 527.3 403 59.8
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 2.3e-147 526.2 386 63.5
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.6e-145 520.0 392 61.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.4e-144 516.9 394 61.4
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.7e-142 510.0 378 61.1
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.9e-142 509.2 373 62.2
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.7e-142 508.8 384 61.7
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.9e-141 506.5 386 62.7
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 5.4e-141 505.0 373 60.3
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.0e-141 504.6 378 60.6
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 7.0e-141 504.6 404 59.4
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 7.0e-141 504.6 378 59.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.2e-140 503.8 384 62.5
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-140 503.1 375 61.1
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-140 503.1 375 61.1
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.1e-138 497.3 373 59.8
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.9e-138 496.5 400 61.5
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 5.6e-138 495.0 373 59.8
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 9.5e-138 494.2 373 59.5
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.8e-137 492.7 374 59.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.8e-137 492.7 374 59.9
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 2.3e-136 489.6 395 60.5
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 4.4e-135 485.3 374 59.9
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 8.3e-134 481.1 384 57.3
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.1e-133 480.7 373 59.2
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 3.2e-133 479.2 374 57.8
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.2e-132 477.2 381 56.2
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.2e-132 477.2 374 61.0
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 3.5e-132 475.7 381 55.6
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 3.0e-131 472.6 387 60.5
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 6.2e-129 464.9 373 57.1
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 6.2e-121 438.3 395 53.9
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.6e-119 433.0 401 52.6
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.5e-116 422.5 390 53.1
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 5.1e-115 418.7 406 50.7
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.3e-114 415.6 393 52.2
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 4.0e-112 409.1 376 50.5
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.2e-109 399.1 382 52.9
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 4.8e-105 385.6 388 49.5
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.5e-103 380.6 393 49.6
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.1e-101 374.4 389 46.3
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.8e-99 367.1 398 46.7
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.8e-99 367.1 401 47.1
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 3.9e-99 365.9 382 49.2
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.0e-95 353.6 402 44.8
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.0e-91 341.3 394 46.4
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.8e-86 322.8 390 45.9
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.7e-84 316.6 388 45.9
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 8.7e-83 311.6 395 44.1
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.3e-81 307.8 388 44.8
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.4e-80 304.3 239 56.9
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 6.5e-78 295.4 393 42.7
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 7.4e-74 282.0 394 42.4
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.2e-73 280.4 390 40.5
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 5.0e-70 269.2 184 67.4
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.7e-66 255.0 229 56.8
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 7.7e-55 218.8 158 61.4
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.0e-54 218.4 416 33.4
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.9e-45 187.6 156 59.6
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 5.9e-39 166.0 320 33.4
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.1e-37 161.8 114 63.2
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.4e-33 146.0 376 29.0
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 9.8e-26 122.1 79 70.9
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 4.3e-21 106.7 67 70.1
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 2.2e-17 94.4 394 25.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 4.4e-10 70.1 45 71.1
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 8.4e-09 65.9 45 62.2
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 4.6e-07 60.1 60 43.3


User provided reference genes

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