Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 2.0e-170 603.2 543 100.0
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 2.0e-122 443.7 541 68.0
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 1.7e-121 440.7 533 82.2
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 8.4e-121 438.3 542 68.1
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 4.1e-120 436.0 540 72.8
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 5.1e-118 429.1 542 68.5
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 1.1e-117 427.9 540 80.6
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 1.9e-117 427.2 540 81.1
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 3.6e-116 422.9 539 79.6
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 6.2e-116 422.2 540 78.9
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 1.4e-115 421.0 530 81.7
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 3.1e-115 419.9 533 79.0
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 5.2e-115 419.1 308 66.2
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 5.2e-115 419.1 540 80.6
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 1.5e-114 417.5 543 78.8
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 8.4e-113 411.8 538 78.6
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 4.6e-111 406.0 541 78.6
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 6.0e-111 405.6 538 79.4
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 6.6e-110 402.1 544 78.5
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 1.1e-109 401.4 540 79.8
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 1.1e-109 401.4 540 79.8
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 1.5e-109 401.0 309 77.7
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 1.6e-108 397.5 541 78.7
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.6e-108 397.5 308 74.4
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 3.6e-108 396.4 541 78.4
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 4.8e-108 396.0 540 80.4
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 1.1e-107 394.8 539 78.3
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 1.1e-107 394.8 309 75.7
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.4e-107 394.4 307 76.5
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 2.4e-107 393.7 541 79.3
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 4.0e-107 392.9 525 80.6
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 5.3e-107 392.5 309 75.1
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 1.5e-106 391.0 304 76.0
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 4.4e-106 389.4 523 79.5
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 5.8e-106 389.0 542 78.6
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 7.6e-106 388.7 541 79.5
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.7e-105 387.5 539 79.0
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 1.7e-105 387.5 541 73.8
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 2.9e-105 386.7 308 77.6
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 3.8e-105 386.3 308 77.6
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 6.4e-105 385.6 308 74.7
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.9e-104 384.0 541 79.1
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 2.4e-104 383.6 541 73.6
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 3.2e-104 383.3 542 66.6
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 3.2e-104 383.3 542 77.9
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 9.3e-104 381.7 536 75.2
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 7.9e-103 378.6 542 75.5
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.0e-102 378.3 541 78.4
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 2.3e-102 377.1 541 78.4
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 3.0e-102 376.7 308 75.3
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 3.0e-102 376.7 300 75.0
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 6.6e-102 375.6 302 76.5
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 1.1e-101 374.8 300 75.0
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 1.9e-101 374.0 541 79.3
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.5e-101 373.6 302 72.5
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 4.3e-101 372.9 308 74.4
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 4.3e-101 372.9 511 71.4
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 5.6e-101 372.5 302 68.5
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 5.6e-101 372.5 304 75.7
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 7.3e-101 372.1 301 58.8
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 9.6e-101 371.7 303 75.6
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 9.6e-101 371.7 543 69.8
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 2.1e-100 370.5 298 75.8
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 3.6e-100 369.8 308 73.1
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 6.2e-100 369.0 303 75.2
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 6.2e-100 369.0 302 75.8
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 1.8e-99 367.5 308 73.1
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 6.9e-99 365.5 540 75.2
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 1.5e-98 364.4 540 76.7
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.5e-98 364.4 308 73.4
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.4e-98 363.2 543 49.2
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.4e-98 363.2 543 49.2
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 7.6e-98 362.1 302 72.8
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 9.9e-98 361.7 298 75.5
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 3.8e-97 359.8 303 73.9
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 2.4e-96 357.1 298 73.5
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 5.5e-96 355.9 556 66.5
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 7.1e-96 355.5 308 67.2
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 3.5e-95 353.2 298 66.4
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 4.6e-95 352.8 301 72.8
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 3.0e-94 350.1 305 72.5
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 3.9e-94 349.7 298 64.1
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 5.1e-94 349.4 309 70.6
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 1.1e-93 348.2 309 69.9
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 1.3e-92 344.7 538 74.7
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 4.9e-89 332.8 308 66.9
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 8.4e-89 332.0 542 72.3
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 9.3e-88 328.6 308 66.6
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 1.6e-87 327.8 309 64.7
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 2.1e-87 327.4 303 67.0
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 5.1e-86 322.8 306 66.0
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 8.7e-86 322.0 309 66.0
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 3.3e-85 320.1 304 66.8
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 5.7e-85 319.3 305 66.6
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 5.7e-85 319.3 305 66.6
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 1.6e-84 317.8 305 66.2
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 4.8e-84 316.2 301 66.1
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 9.0e-83 312.0 305 65.2
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 9.0e-83 312.0 536 65.9
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 7.6e-82 308.9 306 65.0
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 4.6e-79 299.7 288 65.6
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 3.3e-77 293.5 518 46.3
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 7.9e-71 272.3 190 65.8
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 6.7e-62 242.7 205 59.0
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 3.2e-56 223.8 288 45.8
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 1.3e-52 211.8 310 40.0
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 3.4e-37 160.6 326 44.8
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.7e-36 158.3 309 37.9
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 9.2e-27 125.9 329 41.0
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 7.5e-21 106.3 164 34.8
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 2.7e-18 97.8 134 40.3
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.5e-16 91.3 53 69.8
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 9.5e-16 89.4 66 63.6
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 2.1e-10 71.6 165 55.2


User provided reference genes

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