Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 2.5e-99 365.5 195 100.0
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 2.6e-64 249.2 203 65.0
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.3e-63 246.9 198 66.2
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.3e-63 246.9 207 72.5
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 4.9e-63 245.0 208 71.2
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 3.2e-62 242.3 208 70.7
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 9.2e-62 240.7 199 65.8
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 5.9e-61 238.0 202 71.8
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 5.9e-61 238.0 207 71.0
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 5.9e-61 238.0 207 69.1
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.1e-59 233.8 200 69.0
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 2.8e-58 229.2 194 72.2
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 6.2e-58 228.0 207 60.9
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.1e-57 227.3 200 62.0
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.3e-57 226.1 200 62.0
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 3.1e-57 225.7 200 61.5
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.0e-57 225.3 200 61.5
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 8.9e-57 224.2 213 59.2
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 8.9e-57 224.2 202 61.9
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 8.9e-57 224.2 218 58.7
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 8.9e-57 224.2 207 61.8
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 8.9e-57 224.2 216 59.3
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.5e-56 223.4 216 59.3
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 2.0e-56 223.0 205 65.9
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 2.6e-56 222.6 203 60.1
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 3.4e-56 222.2 200 61.0
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 4.4e-56 221.9 209 61.2
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 4.4e-56 221.9 220 64.5
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 4.4e-56 221.9 205 63.9
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.2e-55 219.5 212 59.9
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 4.9e-55 218.4 208 66.3
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 1.4e-54 216.9 202 59.9
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 2.4e-54 216.1 208 64.9
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 3.2e-54 215.7 198 61.1
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 4.1e-54 215.3 207 65.7
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 9.2e-54 214.2 206 60.2
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.2e-53 213.8 195 61.0
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.6e-53 213.4 203 63.5
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 1.6e-53 213.4 202 60.4
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.6e-53 213.4 201 60.2
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 1.6e-53 213.4 194 61.9
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 2.0e-53 213.0 202 61.9
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 3.5e-53 212.2 206 57.8
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 3.5e-53 212.2 207 58.0
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 4.6e-53 211.8 197 60.4
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 6.0e-53 211.5 200 57.5
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 6.0e-53 211.5 206 58.7
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 7.8e-53 211.1 196 59.2
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 7.8e-53 211.1 196 59.2
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 1.3e-52 210.3 148 67.6
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 2.3e-52 209.5 210 64.8
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.3e-52 209.5 202 61.4
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 2.3e-52 209.5 175 62.3
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 3.0e-52 209.1 173 63.0
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.0e-52 209.1 193 60.1
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 6.6e-52 208.0 206 58.7
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 8.6e-52 207.6 206 58.7
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 1.1e-51 207.2 183 60.7
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.1e-51 207.2 194 60.3
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.5e-51 206.8 198 61.1
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 2.5e-51 206.1 198 59.1
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 3.3e-51 205.7 196 58.2
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 3.3e-51 205.7 212 55.2
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 4.3e-51 205.3 195 65.6
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 5.6e-51 204.9 151 68.2
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 5.6e-51 204.9 168 69.6
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 4.7e-50 201.8 202 56.4
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 6.2e-50 201.4 221 57.0
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 6.2e-50 201.4 190 60.0
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 1.4e-49 200.3 200 62.5
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.8e-49 199.9 195 57.9
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.8e-49 199.9 195 57.9
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.8e-49 199.9 195 60.0
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 4.0e-49 198.7 204 56.9
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 4.0e-49 198.7 211 53.6
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.2e-48 197.2 177 61.0
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.2e-48 197.2 212 53.3
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 2.6e-48 196.1 200 59.0
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.3e-47 193.7 147 72.1
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.7e-47 193.4 169 64.5
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 4.9e-47 191.8 111 80.2
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 8.3e-47 191.0 198 54.5
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 1.4e-46 190.3 194 53.6
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.9e-46 189.9 112 78.6
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 2.4e-46 189.5 113 78.8
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 4.1e-46 188.7 194 60.8
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 4.1e-46 188.7 113 77.0
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 5.4e-46 188.3 168 66.7
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 7.1e-46 188.0 207 52.7
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 7.1e-46 188.0 210 51.4
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 9.2e-46 187.6 112 77.7
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 9.2e-46 187.6 112 77.7
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 9.2e-46 187.6 112 77.7
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 9.2e-46 187.6 112 77.7
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 9.2e-46 187.6 112 77.7
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 9.2e-46 187.6 113 76.1
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 1.2e-45 187.2 111 78.4
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 1.6e-45 186.8 205 53.7
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 2.1e-45 186.4 178 54.5
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 3.5e-45 185.7 175 60.0
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 1.0e-44 184.1 111 73.0
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 3.0e-44 182.6 111 73.0
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 3.9e-44 182.2 106 77.4
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 1.9e-43 179.9 191 55.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.6e-42 176.8 148 59.5
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 6.2e-42 174.9 172 51.7
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 1.8e-41 173.3 172 59.9
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 4.0e-41 172.2 108 70.4
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 4.0e-41 172.2 108 71.3
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 2.0e-40 169.9 171 62.0
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 4.4e-40 168.7 108 71.3
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.3e-39 167.2 174 54.0
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 1.7e-39 166.8 185 50.8
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 4.9e-39 165.2 108 70.4
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.1e-38 164.1 176 59.7
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.2e-37 160.6 108 68.5
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.5e-37 159.1 108 63.9
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 6.0e-37 158.3 113 62.8
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.7e-36 156.8 116 62.9
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.9e-36 155.6 152 63.8
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 4.7e-34 148.7 176 52.8
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.3e-31 140.6 157 45.9
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 5.1e-28 128.6 115 52.2
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 6.6e-28 128.3 118 50.0
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.7e-23 113.6 117 48.7
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 2.5e-19 99.8 157 34.4
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 6.0e-13 78.6 93 45.2


User provided reference genes

Program Settings