Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 5.2e-221 770.8 396 100.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 3.6e-182 641.7 429 77.4
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 7.1e-178 627.5 429 75.5
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.6e-177 626.3 435 76.1
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.5e-177 625.2 429 75.3
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 5.8e-172 607.8 425 74.4
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 4.2e-170 601.7 429 72.5
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.2e-169 600.1 430 72.8
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 1.6e-169 599.7 429 72.7
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.1e-169 599.4 429 72.3
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 4.6e-169 598.2 429 72.3
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.0e-168 595.5 429 71.6
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 6.6e-168 594.3 425 72.7
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.5e-167 593.2 426 72.1
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 7.3e-167 590.9 429 72.5
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 9.6e-167 590.5 430 72.3
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.4e-165 586.6 429 71.3
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.5e-164 583.2 429 70.9
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.5e-164 583.2 424 71.9
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 4.5e-164 581.6 430 69.1
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 5.8e-164 581.3 430 71.6
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 9.9e-164 580.5 425 71.3
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.4e-162 576.6 425 70.6
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.9e-162 576.2 421 71.7
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 7.1e-162 574.3 425 71.1
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 5.1e-160 568.2 425 68.9
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 5.1e-160 568.2 429 69.5
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 6.7e-160 567.8 425 70.1
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 8.7e-160 567.4 433 70.0
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.1e-159 567.0 458 66.8
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.1e-159 567.0 422 69.4
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.5e-159 565.8 425 68.5
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.4e-159 564.3 432 68.5
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.6e-159 563.9 425 68.9
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 2.8e-158 562.4 425 70.1
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-157 560.1 425 67.8
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-157 559.7 425 68.5
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.4e-157 559.3 425 68.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 3.1e-157 558.9 429 69.7
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 4.0e-157 558.5 425 68.9
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 4.0e-157 558.5 425 68.5
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.2e-156 557.0 429 68.1
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.0e-156 556.2 417 70.0
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 4.5e-156 555.1 427 68.6
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 5.8e-156 554.7 425 68.5
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 7.6e-156 554.3 425 68.9
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 8.4e-155 550.8 425 67.8
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.4e-154 550.1 425 67.3
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.4e-154 550.1 422 67.3
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.9e-154 549.7 425 68.5
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 3.2e-154 548.9 426 68.3
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 4.2e-154 548.5 425 68.5
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 7.1e-154 547.7 425 66.6
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 9.3e-154 547.4 425 67.5
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 5.1e-152 541.6 434 67.1
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.7e-152 541.2 422 66.6
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 8.7e-152 540.8 427 66.0
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.1e-151 540.4 425 66.6
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.5e-151 540.0 425 66.1
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.3e-151 538.5 422 66.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 4.3e-151 538.5 427 66.7
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 5.6e-151 538.1 422 66.4
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 9.6e-151 537.3 428 66.4
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 3.1e-149 532.3 425 65.4
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 1.5e-148 530.0 425 66.6
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.6e-148 529.3 422 68.0
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 7.6e-148 527.7 439 64.7
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.1e-146 523.9 459 62.1
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 4.2e-146 521.9 427 64.4
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.6e-145 520.0 427 64.9
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.5e-145 518.8 429 63.6
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 4.6e-145 518.5 440 64.5
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.0e-144 517.3 422 62.3
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.3e-144 516.9 424 63.7
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.9e-144 515.4 426 64.3
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 5.1e-144 515.0 427 63.5
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 5.1e-144 515.0 395 66.8
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.7e-144 514.6 464 60.3
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.5e-143 512.7 429 65.0
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 3.7e-142 508.8 425 63.3
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.8e-141 506.5 423 63.8
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 5.3e-141 505.0 422 62.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.7e-139 500.0 427 63.2
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 6.5e-139 498.0 402 64.2
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 3.6e-137 492.3 423 64.1
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 1.1e-135 487.3 425 62.4
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 3.3e-135 485.7 422 58.1
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.4e-133 479.6 426 60.8
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 5.9e-132 474.9 426 60.6
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 7.7e-132 474.6 421 60.8
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.9e-131 472.6 425 58.1
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 6.5e-131 471.5 430 59.8
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 3.2e-130 469.2 392 63.8
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.5e-130 468.4 425 59.5
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.2e-129 467.2 383 65.0
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 3.9e-128 462.2 426 58.2
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 5.1e-128 461.8 425 58.1
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 6.7e-128 461.5 426 58.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 8.8e-128 461.1 426 58.2
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 2.6e-127 459.5 427 58.1
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 2.6e-127 459.5 427 58.1
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 3.3e-127 459.1 426 58.0
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.2e-126 456.4 423 58.2
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 2.2e-126 456.4 426 58.5
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.8e-125 453.4 425 59.8
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 3.1e-125 452.6 426 57.7
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 5.9e-124 448.4 425 57.4
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 5.9e-124 448.4 425 57.4
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.7e-123 446.8 324 72.5
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.2e-123 446.4 313 74.1
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 3.8e-123 445.7 426 57.7
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 6.5e-123 444.9 425 56.5
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 8.5e-123 444.5 425 57.2
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.2e-121 440.7 425 56.5
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 6.1e-121 438.3 426 56.8
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 5.2e-120 435.3 426 56.3
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.0e-119 433.3 420 56.4
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 8.2e-118 427.9 381 60.9
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-117 427.6 426 54.9
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 7.0e-117 424.9 360 62.2
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 3.5e-116 422.5 386 60.4
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 5.5e-114 415.2 424 52.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.3e-112 409.8 427 51.3
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.2e-111 407.5 427 50.1
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 1.3e-107 394.0 446 47.5
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.4e-103 379.0 240 81.2
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.4e-101 373.2 245 78.8
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 9.1e-101 371.3 430 49.1
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 2.7e-100 369.8 388 56.4
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.7e-99 367.1 430 53.3
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 8.0e-97 358.2 400 52.8
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.3e-83 314.3 336 53.0
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.0e-83 313.2 288 56.2
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 6.4e-78 295.4 355 49.0
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 3.5e-76 289.7 357 48.5
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 3.6e-65 253.1 292 50.0
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 4.4e-63 246.1 200 65.5
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 1.8e-56 224.2 430 34.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 1.5e-55 221.1 194 61.3
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 9.9e-55 218.4 325 44.0
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.1e-49 200.7 194 56.2
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.6e-49 199.9 272 45.6
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 3.6e-49 199.9 218 52.8
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 8.4e-46 188.7 331 35.0
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.7e-44 183.7 214 51.9
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.9e-37 161.0 162 52.5
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.7e-30 137.9 105 68.6
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 4.6e-28 129.8 145 51.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.4e-24 118.2 313 29.4
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.1e-24 117.1 76 73.7
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.8e-22 110.2 113 51.3
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.2e-20 105.1 118 46.6
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.6e-20 103.2 66 77.3
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.0e-14 83.2 122 43.4
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.1e-10 72.0 109 45.9
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.8e-08 64.7 45 68.9
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.8e-08 64.7 45 68.9
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.4e-08 64.3 51 58.8
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 3.1e-08 63.9 37 75.7
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.1e-08 63.9 75 46.7
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 4.1e-08 63.5 49 61.2
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 1.2e-07 62.0 43 69.8
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.7e-06 58.2 52 59.6
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 5.0e-06 56.6 49 59.2


User provided reference genes

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