Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 6.7e-78 293.9 143 100.0
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.7e-68 262.7 138 90.6
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 2.4e-67 258.8 131 93.9
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 4.1e-67 258.1 134 92.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 4.1e-67 258.1 132 94.7
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.1e-67 258.1 128 94.5
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 5.3e-67 257.7 133 93.2
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 5.3e-67 257.7 130 96.2
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 9.1e-67 256.9 124 98.4
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 9.1e-67 256.9 124 98.4
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 9.1e-67 256.9 127 95.3
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 9.1e-67 256.9 131 92.4
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.2e-66 256.5 131 93.1
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.5e-66 256.1 138 90.6
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.5e-66 256.1 127 95.3
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.5e-66 256.1 127 95.3
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.5e-66 256.1 127 95.3
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.0e-66 255.8 124 97.6
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.0e-66 255.8 132 91.7
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.0e-66 255.8 132 91.7
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 2.6e-66 255.4 128 94.5
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 2.6e-66 255.4 130 94.6
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.4e-66 255.0 130 94.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 3.4e-66 255.0 124 97.6
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 3.4e-66 255.0 137 91.2
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 3.4e-66 255.0 132 91.7
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 3.4e-66 255.0 135 92.6
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 4.5e-66 254.6 131 92.4
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.9e-66 254.2 131 92.4
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 5.9e-66 254.2 127 93.7
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 7.7e-66 253.8 131 91.6
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 7.7e-66 253.8 132 91.7
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 7.7e-66 253.8 131 90.8
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 1.0e-65 253.4 131 91.6
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.0e-65 253.4 133 89.5
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.0e-65 253.4 126 94.4
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.0e-65 253.4 134 91.8
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.0e-65 253.4 126 94.4
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.0e-65 253.4 130 90.8
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.0e-65 253.4 130 90.8
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.3e-65 253.1 129 93.0
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.7e-65 252.7 133 91.0
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.7e-65 252.7 131 91.6
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.7e-65 252.7 131 91.6
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.7e-65 252.7 131 91.6
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.7e-65 252.7 131 91.6
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.7e-65 252.7 124 96.0
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.7e-65 252.7 131 91.6
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 2.2e-65 252.3 127 94.5
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 2.2e-65 252.3 127 94.5
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.2e-65 252.3 131 90.8
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.9e-65 251.9 134 89.6
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.9e-65 251.9 131 90.8
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.9e-65 251.9 131 90.8
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.9e-65 251.9 127 93.7
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 2.9e-65 251.9 131 91.6
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 2.9e-65 251.9 127 92.9
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 2.9e-65 251.9 131 91.6
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.9e-65 251.9 131 90.8
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 3.8e-65 251.5 131 90.8
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 3.8e-65 251.5 131 90.8
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.8e-65 251.5 124 95.2
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 5.0e-65 251.1 124 94.4
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 5.0e-65 251.1 130 92.3
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 5.0e-65 251.1 130 92.3
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 5.0e-65 251.1 131 93.1
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 5.0e-65 251.1 130 92.3
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 6.5e-65 250.8 130 92.3
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 6.5e-65 250.8 130 92.3
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 6.5e-65 250.8 133 90.2
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 6.5e-65 250.8 130 92.3
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 6.5e-65 250.8 133 89.5
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 8.5e-65 250.4 133 91.0
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 8.5e-65 250.4 134 88.8
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 8.5e-65 250.4 130 92.3
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 1.1e-64 250.0 127 92.1
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.1e-64 250.0 130 91.5
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.4e-64 249.6 131 90.1
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.4e-64 249.6 132 92.4
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.4e-64 249.6 137 87.6
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.9e-64 249.2 130 91.5
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.9e-64 249.2 131 90.1
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.5e-64 248.8 130 90.8
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 3.2e-64 248.4 131 88.5
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 3.2e-64 248.4 134 88.8
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.2e-64 248.1 133 90.2
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.2e-64 248.1 133 90.2
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 5.5e-64 247.7 131 91.6
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 5.5e-64 247.7 133 88.7
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 5.5e-64 247.7 124 95.2
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 7.2e-64 247.3 132 89.4
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 7.2e-64 247.3 133 88.7
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 7.2e-64 247.3 131 90.8
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 9.4e-64 246.9 130 90.0
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.2e-63 246.5 131 90.1
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.2e-63 246.5 140 85.7
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.6e-63 246.1 127 92.9
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.6e-63 246.1 127 92.9
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.6e-63 246.1 131 90.1
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.6e-63 246.1 134 88.1
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.6e-63 246.1 131 90.1
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 2.1e-63 245.7 131 88.5
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.1e-63 245.7 131 89.3
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.1e-63 245.7 131 89.3
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.1e-63 245.7 131 89.3
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.1e-63 245.7 131 89.3
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 2.1e-63 245.7 131 89.3
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 2.7e-63 245.4 130 89.2
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 3.6e-63 245.0 124 92.7
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.6e-63 245.0 130 89.2
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 3.6e-63 245.0 132 87.9
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.7e-63 244.6 131 88.5
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-62 243.4 131 89.3
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-62 243.4 131 89.3
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-62 243.4 131 89.3
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.0e-62 243.4 127 90.6
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.0e-62 243.4 127 90.6
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.0e-62 243.4 127 90.6
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.4e-62 243.0 124 93.5
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.4e-62 243.0 127 90.6
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.8e-62 242.7 133 88.0
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-62 242.7 133 88.0
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.8e-62 242.7 133 88.0
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.3e-62 242.3 131 89.3
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 3.9e-62 241.5 132 85.6
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 5.2e-62 241.1 127 88.2
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 5.2e-62 241.1 137 86.1
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.2e-62 241.1 125 92.0
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.5e-61 239.6 127 89.0
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 2.0e-61 239.2 127 87.4
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 2.0e-61 239.2 127 89.0
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 2.0e-61 239.2 127 89.0
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 3.3e-61 238.4 131 86.3
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 7.4e-61 237.3 131 85.5
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 9.7e-61 236.9 127 86.6
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 2.2e-60 235.7 130 86.9
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 2.2e-60 235.7 130 86.9
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.4e-59 232.3 125 85.6
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 3.1e-59 231.9 135 83.7
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 3.1e-59 231.9 124 89.5
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.2e-55 219.9 131 84.0
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 3.6e-55 218.4 112 92.9
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 4.4e-53 211.5 187 59.9
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 2.4e-51 205.7 125 72.8
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 5.3e-51 204.5 125 71.2
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 1.2e-50 203.4 127 79.5
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 1.2e-50 203.4 119 80.7
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.1e-47 192.6 130 70.8
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.0e-46 190.3 115 77.4
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.1e-43 178.3 87 95.4
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 3.8e-41 171.8 124 70.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 5.5e-40 167.9 96 81.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.6e-39 166.4 83 95.2
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 1.8e-38 162.9 83 94.0
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 4.0e-38 161.8 81 95.1
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 8.9e-38 160.6 85 87.1
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 3.4e-37 158.7 83 89.2
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.4e-35 152.5 130 62.3
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-30 136.7 95 75.8
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 6.8e-30 134.4 73 86.3
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.7e-28 129.8 71 90.1
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.4e-28 127.9 71 90.1
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.2e-27 125.6 71 88.7
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 3.5e-26 122.1 61 93.4
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.3e-24 115.2 73 76.7
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.6e-23 112.1 54 96.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 8.1e-15 84.3 46 87.0
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.3e-12 77.0 53 69.8


User provided reference genes

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