Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A402T45 Lonicera japonica HOM05D007405 ORTHO05D009256 7.4e-148 528.5 651 100.0
Dinv33696 Davidia involucrata HOM05D007405 ORTHO05D009256 2.0e-60 238.0 658 74.6
Prupe.3G273600 Prunus persica HOM05D007405 ORTHO05D009256 4.6e-57 226.9 619 75.0
CSS0008879 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 1.3e-56 225.3 558 76.5
Cpa.g.sc14.54 Carica papaya HOM05D007405 ORTHO05D009256 1.2e-54 218.8 467 34.7
Oeu027767.1 Olea europaea HOM05D007405 ORTHO05D009256 1.6e-54 218.4 651 77.6
Cfa007501 Carpinus fangiana HOM05D007405 ORTHO05D009256 2.1e-54 218.0 666 75.8
Sopen02g032330 Solanum pennellii HOM05D007405 ORTHO05D009256 2.1e-54 218.0 665 76.2
Ca_16386_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 1.5e-52 211.8 197 58.4
Ca_29700_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 1.5e-52 211.8 197 58.4
ClCG10G014780 Citrullus lanatus HOM05D007405 ORTHO05D009256 7.6e-52 209.5 630 78.7
CSS0011088 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 1.7e-51 208.4 480 83.5
Haze_14594 Corylus avellana HOM05D007405 ORTHO05D009256 6.4e-51 206.5 562 74.6
DCAR_011169 Daucus carota HOM05D007405 ORTHO05D009256 6.4e-51 206.5 547 75.9
Medtr3g083680 Medicago truncatula HOM05D007405 ORTHO05D009256 1.1e-50 205.7 166 62.7
Psat5g105040 Pisum sativum HOM05D007405 ORTHO05D009256 1.1e-50 205.7 242 49.2
CsaV3_3G041760 Cucumis sativus L. HOM05D007405 ORTHO05D009256 1.9e-50 204.9 570 73.5
TPR.G22753 Trifolium pratense HOM05D007405 ORTHO05D009256 3.2e-50 204.1 194 56.7
Solyc02g087560.1 Solanum lycopersicum HOM05D007405 ORTHO05D009256 4.2e-50 203.8 557 75.0
GSVIVG01032591001 Vitis vinifera HOM05D007405 ORTHO05D009256 9.2e-50 202.6 676 76.0
Cc07_g02870 Coffea canephora HOM05D007405 ORTHO05D009256 1.2e-49 202.2 585 77.1
PGSC0003DMG400001306 Solanum tuberosum HOM05D007405 ORTHO05D009256 3.5e-49 200.7 582 82.6
CAN.G206.101 Capsicum annuum HOM05D007405 ORTHO05D009256 7.8e-49 199.5 550 75.1
Sed0003758 Sechium edule HOM05D007405 ORTHO05D009256 1.0e-48 199.1 518 77.6
Migut.H00884 Erythranthe guttata HOM05D007405 ORTHO05D009256 1.3e-48 198.7 575 72.7
EL10Ac2g02615 Beta vulgaris HOM05D007405 ORTHO05D009256 2.3e-48 198.0 529 75.8
Lsat_1_v5_gn_2_90480 Lactuca sativa HOM05D007405 ORTHO05D009256 8.7e-48 196.1 670 75.1
MELO3C009896.2 Cucumis melo HOM05D007405 ORTHO05D009256 1.1e-47 195.7 558 74.0
Glyma.18G000700 Glycine max HOM05D007405 ORTHO05D009256 4.3e-47 193.7 517 76.4
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 9.6e-47 192.6 588 63.3
Ah.10g031180 Amaranthus hybridus HOM05D007405 ORTHO05D009256 1.6e-46 191.8 533 74.9
MSTRG.19401 Avicennia marina HOM05D007405 ORTHO05D009256 2.1e-46 191.4 629 76.8
Nitab4.5_0002265g0130 Nicotiana tabacum HOM05D007405 ORTHO05D009256 2.8e-46 191.0 547 74.0
MD09G1044200 Malus domestica HOM05D007405 ORTHO05D009256 6.2e-46 189.9 524 76.0
VMungo1383G1541 Vigna mungo HOM05D007405 ORTHO05D009256 1.1e-45 189.1 513 76.6
Glyma.11G256300 Glycine max HOM05D007405 ORTHO05D009256 3.1e-45 187.6 486 79.4
FAN02G3321 Fragaria x ananassa HOM05D007405 ORTHO05D009256 2.6e-44 184.5 225 51.1
QL02p079911 Quercus lobata HOM05D007405 ORTHO05D009256 3.4e-44 184.1 561 73.1
CiPaw.04G020600 Carya illinoinensis HOM05D007405 ORTHO05D009256 7.6e-44 183.0 560 73.6
HanXRQChr14g0449381 Helianthus annuus HOM05D007405 ORTHO05D009256 5.4e-42 176.8 179 54.2
Manes.17G025500 Manihot esculenta HOM05D007405 ORTHO05D009256 7.1e-42 176.4 193 55.4
Sabra17G0067600 Salix brachista HOM05D007405 ORTHO05D009256 9.3e-42 176.0 557 72.4
Lj6g0001930 Lotus japonicus HOM05D007405 ORTHO05D009256 1.2e-41 175.6 500 78.0
CANSAT64G0564 Cannabis sativa HOM05D007405 ORTHO05D009256 1.6e-41 175.3 564 72.2
Atru.chr8.2441 Acer truncatum HOM05D007405 ORTHO05D009256 2.1e-41 174.9 197 50.8
BcaC08g44440 Brassica carinata HOM05D007405 ORTHO05D009256 2.1e-41 174.9 181 58.0
C06p18840 Brassica napus HOM05D007405 ORTHO05D009256 2.1e-41 174.9 181 58.0
BolC6t37089H Brassica oleracea HOM05D007405 ORTHO05D009256 2.1e-41 174.9 181 58.0
FAN05G4748 Fragaria x ananassa HOM05D007405 ORTHO05D009256 2.7e-41 174.5 539 68.5
AUR62018305 Chenopodium quinoa HOM05D007405 ORTHO05D009256 3.5e-41 174.1 533 73.4
PGR031G2628 Punica granatum HOM05D007405 ORTHO05D009256 3.5e-41 174.1 111 72.1
Potri.017G075700 Populus trichocarpa HOM05D007405 ORTHO05D009256 4.6e-41 173.7 660 69.1
Sp7g02090 Schrenkiella parvula HOM05D007405 ORTHO05D009256 1.3e-40 172.2 180 57.2
CARHR262150 Cardamine hirsuta HOM05D007405 ORTHO05D009256 1.7e-40 171.8 128 65.6
Lalb_Chr23g0278451 Lupinus albus HOM05D007405 ORTHO05D009256 1.7e-40 171.8 214 48.1
SGA_v2.0_scaffold115G32153 Striga asiatica HOM05D007405 ORTHO05D009256 1.7e-40 171.8 164 54.9
A07p20170 Brassica napus HOM05D007405 ORTHO05D009256 6.6e-40 169.9 174 57.5
TWI56G0828 Tripterygium wilfordii HOM05D007405 ORTHO05D009256 6.6e-40 169.9 159 57.9
AT5G39980 Arabidopsis thaliana HOM05D007405 ORTHO05D009256 8.7e-40 169.5 179 56.4
AL7G50110 Arabidopsis lyrata HOM05D007405 ORTHO05D009256 1.1e-39 169.1 166 57.8
FAN02G3519 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.1e-39 169.1 674 70.2
FAN09G1987 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.1e-39 169.1 570 70.5
FAN14G0904 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.5e-39 168.7 567 70.7
FAN14G4765 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.5e-39 168.7 567 70.7
MBI08_g09795_MAGBIO Magnolia biondii HOM05D007405 ORTHO05D009256 1.5e-39 168.7 489 77.9
BraA07t29716Z Brassica rapa HOM05D007405 ORTHO05D009256 3.3e-39 167.5 174 56.9
Ciclev10011224m.g Citrus clementina HOM05D007405 ORTHO05D009256 4.3e-39 167.2 211 47.9
Sc11g0006880 Simmondsia chinensis HOM05D007405 ORTHO05D009256 4.3e-39 167.2 565 70.1
Thhalv10028245m.g Eutrema salsugineum HOM05D007405 ORTHO05D009256 5.6e-39 166.8 188 53.2
AUR62030576 Chenopodium quinoa HOM05D007405 ORTHO05D009256 7.3e-39 166.4 533 73.7
TAR039G0001 Trochodendron aralioides HOM05D002295 ORTHO05D002789 9.6e-39 166.0 167 53.9
FvH4_6g49520 Fragaria vesca HOM05D007405 ORTHO05D009256 1.3e-38 165.6 546 72.2
PSO832G3067 Papaver somniferum HOM05D007405 ORTHO05D009256 3.6e-38 164.1 489 78.5
RcHm_v2.0_Chr2g0169431 Rosa chinensis HOM05D007405 ORTHO05D009256 3.6e-38 164.1 497 76.7
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 6.2e-38 163.3 166 56.0
PSO591G0419 Papaver somniferum HOM05D007405 ORTHO05D009256 5.3e-37 160.2 489 77.9
BcaB02g07958 Brassica carinata HOM05D007405 ORTHO05D009256 6.9e-37 159.8 157 54.8
Gohir.A07G215301 Gossypium hirsutum HOM05D007405 ORTHO05D009256 2.6e-36 157.9 177 51.4
Gohir.D07G222200 Gossypium hirsutum HOM05D007405 ORTHO05D009256 2.6e-36 157.9 176 51.1
Gorai.001G256500 Gossypium raimondii HOM05D007405 ORTHO05D009256 2.6e-36 157.9 176 51.1
Nn1g09226 Nelumbo nucifera HOM05D007405 ORTHO05D009256 5.8e-36 156.8 130 63.1
THA.LOC104823926 Tarenaya hassleriana HOM05D007405 ORTHO05D009256 7.6e-36 156.4 170 55.3
Carub.0007s3571 Capsella rubella HOM05D007405 ORTHO05D009256 1.3e-35 155.6 108 69.4
Thecc.04G073000 Theobroma cacao HOM05D007405 ORTHO05D009256 1.4e-34 152.1 154 53.2
Actinidia36037 Actinidia chinensis HOM05D007405 ORTHO05D009256 1.2e-33 149.1 183 48.6
Duzib147G0736 Durio zibethinus HOM05D007405 ORTHO05D009256 2.1e-33 148.3 175 49.1
Peaxi162Scf00129g00512 Petunia axillaris HOM05D007405 ORTHO05D009256 5.1e-32 143.7 442 82.1
Rhsim10G0030900 Rhododendron simsii HOM05D007405 ORTHO05D009256 5.6e-31 140.2 93 72.0
ATR1127G129 Amborella trichopoda HOM05D007405 ORTHO05D009256 5.8e-28 130.2 148 50.0
Phvul.001G268500 Phaseolus vulgaris HOM05D007405 ORTHO05D009256 7.6e-28 129.8 71 83.1
Nitab4.5_0000564g0400 Nicotiana tabacum HOM05D007405 ORTHO05D009256 1.8e-24 118.6 65 83.1
CDE06G2170 Ceratophyllum demersum HOM05D007405 ORTHO05D009256 3.0e-24 117.9 79 69.6
Pp3c3_5760 Physcomitrium patens HOM05D007405 ORTHO05D009256 3.7e-22 110.9 106 47.2
Pp3c3_5764 Physcomitrium patens HOM05D007405 ORTHO05D009256 3.7e-22 110.9 106 47.2
SEGI_22031 Sequoiadendron giganteum HOM05D007405 ORTHO05D009256 1.1e-21 109.4 98 51.0
Mapoly0061s0076 Marchantia polymorpha HOM05D007405 ORTHO05D009256 2.2e-19 101.7 97 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2241 Anthoceros agrestis HOM05D007405 ORTHO05D009256 8.4e-19 99.8 98 50.0
HPP92_019727 Vanilla planifolia HOM05D007405 ORTHO05D009256 2.7e-17 94.7 80 50.0
Eucgr.J02141 Eucalyptus grandis HOM05D007405 ORTHO05D009256 3.0e-16 91.3 53 79.2
Zm00001eb148940 Zea mays HOM05D007405 ORTHO05D009256 3.9e-16 90.9 69 58.0
Os01g0833000 Oryza sativa ssp. japonica HOM05D007405 ORTHO05D009256 3.3e-15 87.8 69 55.1
FAN02G2814 Fragaria x ananassa HOM05D007405 ORTHO05D009256 5.0e-11 73.9 39 89.7
SMO367G0452 Selaginella moellendorffii HOM05D007405 ORTHO05D009256 5.0e-11 73.9 53 62.3
Glyma.10G001500 Glycine max HOM05D002479 ORTHO05D002675 3.6e-09 67.8 160 25.0
RcHm_v2.0_Chr4g0388991 Rosa chinensis HOM05D002479 ORTHO05D002675 6.1e-09 67.0 128 30.5
AUR62006894 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.8e-08 65.5 117 27.4
CSS0026566 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.3e-08 65.1 125 26.4
CSS0032076 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.3e-08 65.1 125 26.4
AUR62000543 Chenopodium quinoa HOM05D002479 ORTHO05D002675 2.3e-08 65.1 126 27.0
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 3.9e-08 64.3 127 27.6
Actinidia06062 Actinidia chinensis HOM05D007405 ORTHO05D009256 5.1e-08 63.9 47 72.3
EL10Ac4g09674 Beta vulgaris HOM05D002479 ORTHO05D002675 5.1e-08 63.9 126 26.2
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 6.7e-08 63.5 142 28.2
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 6.7e-08 63.5 145 31.0
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 1.1e-07 62.8 152 27.6
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.1e-07 62.8 160 27.5
Aa31LG8G9510 Aethionema arabicum HOM05D002479 ORTHO05D002675 1.5e-07 62.4 150 25.3
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 1.5e-07 62.4 160 28.1
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.5e-07 62.4 160 28.1
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.5e-07 62.4 160 28.1
QL06p014970 Quercus lobata HOM05D002479 ORTHO05D002675 1.5e-07 62.4 117 27.4
Ciclev10004292m.g Citrus clementina HOM05D002479 ORTHO05D002675 2.0e-07 62.0 117 24.8
Ah.06g188680 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.5e-07 61.6 126 24.6
Ah.06g188690 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.5e-07 61.6 126 24.6
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 2.5e-07 61.6 142 26.1
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 2.5e-07 61.6 126 26.2
SGA_v2.0_scaffold117G32408 Striga asiatica HOM05D002479 ORTHO05D002675 2.5e-07 61.6 154 26.0
TWI09G1194 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 2.5e-07 61.6 117 29.1
TAR365G0241 Trochodendron aralioides HOM05D002479 ORTHO05D002675 2.5e-07 61.6 117 25.6
MD13G1203500 Malus domestica HOM05D002479 ORTHO05D002675 4.3e-07 60.8 117 27.4
Actinidia06059 Actinidia chinensis HOM05D007405 ORTHO05D009256 5.7e-07 60.5 47 68.1
PSO170G3719 Papaver somniferum HOM05D002479 ORTHO05D002675 5.7e-07 60.5 150 24.0
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 5.7e-07 60.5 144 26.4
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 7.4e-07 60.1 141 24.8
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 9.7e-07 59.7 150 24.0
Actinidia06778 Actinidia chinensis HOM05D002479 ORTHO05D002675 1.3e-06 59.3 125 25.6
MSTRG.14189 Avicennia marina HOM05D002479 ORTHO05D002675 1.3e-06 59.3 142 26.1
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 1.7e-06 58.9 142 26.1
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.7e-06 58.9 142 26.1
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.7e-06 58.9 142 26.1
Medtr1g090120 Medicago truncatula HOM05D002479 ORTHO05D002675 1.7e-06 58.9 117 28.2
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 1.7e-06 58.9 140 25.7
PSO528G0065 Papaver somniferum HOM05D002479 ORTHO05D002675 2.2e-06 58.5 161 23.0
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.8e-06 58.2 146 24.7
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.8e-06 58.2 150 24.7
Glyma.10G193100 Glycine max HOM05D002479 ORTHO05D002675 2.8e-06 58.2 126 29.4
LjContig00141g0004174 Lotus japonicus HOM05D002479 ORTHO05D002675 2.8e-06 58.2 128 25.8
Manes.15G035300 Manihot esculenta HOM05D002479 ORTHO05D002675 2.8e-06 58.2 117 23.9
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 3.7e-06 57.8 117 24.8
Glyma.20G197300 Glycine max HOM05D002479 ORTHO05D002675 3.7e-06 57.8 125 29.6
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 3.7e-06 57.8 143 23.8
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 3.7e-06 57.8 140 25.0
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 3.7e-06 57.8 144 26.4
Solyc07g054480.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 3.7e-06 57.8 140 24.3
Sopen07g028420 Solanum pennellii HOM05D002479 ORTHO05D002675 3.7e-06 57.8 140 24.3
BcaB06g26423 Brassica carinata HOM05D002479 ORTHO05D002675 4.8e-06 57.4 126 24.6
CANSAT78G2316 Cannabis sativa HOM05D002479 ORTHO05D002675 4.8e-06 57.4 91 29.7
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 4.8e-06 57.4 147 28.6
Lj5g0026763 Lotus japonicus HOM05D002479 ORTHO05D002675 4.8e-06 57.4 118 28.8
MBI11_g15907_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 4.8e-06 57.4 117 25.6
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 6.3e-06 57.0 140 22.9
SalBow1G6410 Salvia bowleyana HOM05D002479 ORTHO05D002675 6.3e-06 57.0 142 24.6
BcaC05g27986 Brassica carinata HOM05D002479 ORTHO05D002675 8.2e-06 56.6 126 24.6
A05p25680 Brassica napus HOM05D002479 ORTHO05D002675 8.2e-06 56.6 126 24.6
C05p39950 Brassica napus HOM05D002479 ORTHO05D002675 8.2e-06 56.6 126 24.6
BolC5t32740H Brassica oleracea HOM05D002479 ORTHO05D002675 8.2e-06 56.6 126 24.6
BraA05t21449Z Brassica rapa HOM05D002479 ORTHO05D002675 8.2e-06 56.6 126 24.6
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 8.2e-06 56.6 142 25.4
Glyma.08G174800 Glycine max HOM05D002479 ORTHO05D002675 8.2e-06 56.6 125 25.6
HanXRQChr06g0184931 Helianthus annuus HOM05D002479 ORTHO05D002675 8.2e-06 56.6 126 23.0
Potri.010G078900 Populus trichocarpa HOM05D002479 ORTHO05D002675 8.2e-06 56.6 117 28.2
Prupe.1G026500 Prunus persica HOM05D002479 ORTHO05D002675 8.2e-06 56.6 91 29.7
PGSC0003DMG400018365 Solanum tuberosum HOM05D002479 ORTHO05D002675 8.2e-06 56.6 140 24.3


User provided reference genes

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