Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 2.4e-284 981.5 483 100.0
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 2.4e-252 875.2 483 88.2
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 6.7e-247 857.1 483 86.7
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 6.9e-244 847.0 483 85.5
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 1.1e-241 839.7 483 84.7
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 3.7e-237 824.7 483 82.6
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 4.8e-237 824.3 484 83.5
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 2.4e-236 822.0 483 83.4
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 3.1e-236 821.6 482 82.6
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 9.1e-236 820.1 483 83.0
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.2e-235 819.7 483 82.2
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 5.9e-235 817.4 482 81.3
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 5.9e-235 817.4 482 81.7
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 7.7e-235 817.0 483 81.8
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 7.7e-235 817.0 483 82.0
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.0e-234 816.6 483 82.0
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 1.0e-234 816.6 482 81.7
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 1.3e-234 816.2 483 82.0
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 1.3e-234 816.2 483 82.2
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.2e-234 815.5 483 82.0
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 5.0e-234 814.3 483 81.2
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 5.0e-234 814.3 483 82.0
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 6.5e-234 813.9 482 81.5
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 8.5e-234 813.5 483 82.2
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 1.9e-233 812.4 483 83.0
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 2.5e-233 812.0 485 82.3
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 7.2e-233 810.4 483 81.6
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 9.4e-233 810.1 483 83.4
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 9.4e-233 810.1 483 81.8
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 2.7e-232 808.5 483 82.4
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 2.7e-232 808.5 484 81.8
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 2.7e-232 808.5 483 81.8
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 3.6e-232 808.1 483 81.4
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 1.0e-231 806.6 483 81.0
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.4e-231 806.2 483 81.2
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 1.8e-231 805.8 482 80.3
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 2.3e-231 805.4 483 81.4
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 3.0e-231 805.1 480 81.5
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 3.0e-231 805.1 480 81.2
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 6.7e-231 803.9 484 81.2
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.1e-230 803.1 484 81.4
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 1.5e-230 802.7 484 81.0
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 1.5e-230 802.7 484 81.4
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 3.3e-230 801.6 483 81.0
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 3.3e-230 801.6 482 79.7
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 5.7e-230 800.8 484 80.0
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 7.4e-230 800.4 483 81.0
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 7.4e-230 800.4 484 81.6
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 2.2e-229 798.9 484 80.4
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 4.8e-229 797.7 485 80.0
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 6.3e-229 797.3 483 81.0
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 8.2e-229 797.0 483 81.0
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.1e-228 796.6 483 79.9
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.1e-228 795.0 483 80.1
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.1e-228 795.0 483 80.1
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.6e-227 792.7 489 79.6
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.6e-227 792.0 485 79.4
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 3.5e-227 791.6 483 79.7
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 4.5e-227 791.2 483 80.3
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 1.0e-226 790.0 483 78.9
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 1.3e-226 789.6 485 80.8
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 1.3e-226 789.6 489 79.1
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 8.5e-226 786.9 514 75.9
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 8.5e-226 786.9 484 78.9
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.5e-225 786.2 483 79.9
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 1.6e-224 782.7 482 78.8
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 2.7e-224 781.9 458 83.2
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 6.1e-224 780.8 485 79.6
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 2.3e-223 778.9 482 79.7
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 4.4e-222 774.6 485 78.4
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 4.4e-222 774.6 481 78.8
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 4.4e-222 774.6 484 78.3
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 5.7e-222 774.2 483 78.9
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 4.8e-221 771.2 483 78.7
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 1.4e-220 769.6 486 78.6
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 2.4e-220 768.8 484 78.7
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 5.3e-220 767.7 486 78.2
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 9.1e-220 766.9 484 77.9
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.2e-219 766.5 417 87.3
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 2.0e-219 765.8 484 77.7
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 1.3e-218 763.1 484 77.7
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 3.8e-218 761.5 484 77.9
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 9.4e-217 756.9 482 77.8
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 2.7e-216 755.4 484 76.9
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 8.0e-216 753.8 482 76.6
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.8e-215 752.7 488 77.0
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.8e-215 752.7 488 77.0
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 6.8e-215 750.7 486 77.2
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 1.5e-214 749.6 482 77.2
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 4.4e-214 748.0 482 77.0
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 5.7e-214 747.7 485 76.9
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 4.8e-213 744.6 482 76.6
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 1.1e-212 743.4 467 79.2
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 2.4e-212 742.3 485 76.3
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 4.1e-212 741.5 484 76.0
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 2.0e-211 739.2 481 76.7
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 5.9e-211 737.6 484 76.2
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 3.3e-209 731.9 489 75.5
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 1.1e-201 706.8 484 74.6
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 5.4e-196 688.0 482 72.6
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 7.8e-195 684.1 444 76.6
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 1.2e-192 676.8 398 77.4
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 1.5e-190 669.8 383 83.6
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 4.4e-190 668.3 430 73.7
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 2.9e-189 665.6 412 75.7
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 1.2e-187 660.2 443 72.0
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 2.5e-185 652.5 389 76.9
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 8.6e-178 627.5 392 74.0
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.6e-177 624.8 431 72.2
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 1.1e-172 610.5 479 65.6
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 2.4e-167 592.8 289 99.7
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 7.1e-164 581.3 388 67.3
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 3.5e-163 578.9 397 66.0
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 6.0e-155 551.6 289 91.3
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.7e-141 506.9 341 73.0
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.2e-136 490.0 372 65.6
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.5e-105 387.5 237 78.1
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.1e-103 379.8 268 70.5
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.7e-80 304.3 171 83.0
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.3e-61 241.5 196 62.2
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.6e-60 236.1 135 83.0
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 4.7e-59 233.0 130 85.4
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 6.8e-58 229.2 136 80.1
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 2.6e-49 200.7 140 73.6
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 2.1e-46 191.0 157 61.8
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 1.1e-36 158.7 97 78.4
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 2.5e-31 141.0 105 65.7
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 6.1e-14 83.2 59 66.1
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 1.4e-10 72.0 280 25.0
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.9e-08 64.3 128 32.8
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 3.8e-08 63.9 178 28.7
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 5.5e-07 60.1 150 26.7
Pp3c13_5280 Physcomitrium patens HOM05D000776 ORTHO05D001624 1.2e-06 58.9 172 27.9
CDE02G3659 Ceratophyllum demersum HOM05D000776 ORTHO05D002281 4.7e-06 57.0 202 26.2
Pp3c14_11550 Physcomitrium patens HOM05D000776 ORTHO05D002281 4.7e-06 57.0 189 26.5
SEGI_05924 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 4.7e-06 57.0 135 27.4
MD09G1137100 Malus domestica HOM05D000776 ORTHO05D002281 6.1e-06 56.6 352 23.9
Aqoxy3G04099 Aquilegia oxysepala HOM05D000776 ORTHO05D002281 7.9e-06 56.2 186 27.4
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 7.9e-06 56.2 161 24.8


User provided reference genes

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