Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 3.5e-213 745.0 461 100.0
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.9e-142 510.0 479 70.8
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 6.2e-141 505.0 488 69.3
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 4.9e-138 495.4 501 67.5
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.1e-134 484.2 470 69.8
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 2.0e-131 473.4 508 64.4
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.6e-131 473.0 499 64.3
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 9.2e-129 464.5 484 65.9
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 4.6e-128 462.2 483 61.3
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.5e-126 457.2 463 62.0
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 4.9e-122 442.2 482 56.0
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 3.2e-121 439.5 468 59.4
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 3.3e-118 429.5 480 57.3
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.3e-118 429.5 480 60.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 3.3e-118 429.5 506 65.6
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 3.3e-118 429.5 488 65.8
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 3.6e-117 426.0 475 61.7
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.8e-117 425.6 486 60.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 6.2e-117 425.2 480 55.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.1e-116 424.5 486 59.9
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 5.3e-116 422.2 480 59.8
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 4.5e-115 419.1 468 59.4
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 7.6e-115 418.3 486 61.3
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.7e-114 417.2 480 61.9
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 8.4e-114 414.8 470 55.7
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.1e-112 410.2 474 58.2
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 7.9e-112 408.3 466 53.9
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.3e-111 407.5 460 54.8
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.8e-111 407.1 476 58.4
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.1e-111 405.6 473 59.4
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.1e-110 404.4 466 57.1
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 3.3e-110 402.9 467 60.8
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.1e-109 400.2 472 53.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.1e-109 400.2 464 57.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 8.1e-109 398.3 468 57.5
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.4e-108 397.5 463 52.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 4.0e-108 396.0 468 58.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.3e-108 395.6 469 53.1
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 5.3e-108 395.6 472 56.4
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.9e-108 395.2 484 53.5
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 6.9e-108 395.2 475 55.8
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.2e-107 394.4 484 53.3
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.5e-107 394.0 484 53.1
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.6e-107 393.3 464 55.6
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.3e-106 391.0 464 52.4
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 2.9e-106 389.8 464 56.7
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 2.9e-106 389.8 490 49.4
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 4.9e-106 389.0 471 56.7
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.9e-105 387.1 472 53.8
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.9e-105 387.1 475 55.4
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 4.2e-105 386.0 480 56.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.2e-104 384.4 473 51.8
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 4.6e-104 382.5 477 54.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 6.0e-104 382.1 462 52.6
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 6.0e-104 382.1 476 58.4
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.0e-103 381.3 474 55.5
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.8e-103 380.6 464 55.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.3e-103 380.2 463 56.4
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 8.7e-103 378.3 465 51.0
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 1.5e-102 377.5 499 51.7
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.3e-102 376.3 466 55.6
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 4.3e-102 375.9 474 52.3
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.1e-100 371.3 468 56.0
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 2.4e-100 370.2 487 53.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 4.0e-100 369.4 493 54.6
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.5e-99 367.5 474 52.5
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.4e-99 366.3 520 48.7
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 4.5e-99 365.9 473 52.4
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.3e-98 364.4 494 53.4
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.3e-98 364.4 469 52.9
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 6.5e-98 362.1 501 52.5
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 2.5e-97 360.1 483 60.7
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 3.2e-97 359.8 464 53.7
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 3.2e-97 359.8 465 55.1
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 5.5e-97 359.0 462 55.8
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 7.1e-97 358.6 470 51.9
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.6e-96 357.5 482 52.9
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.6e-96 357.5 464 50.6
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 7.9e-96 355.1 468 53.4
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.8e-95 354.0 483 51.8
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 5.1e-95 352.4 465 57.8
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.8e-93 346.7 478 48.3
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 3.7e-93 346.3 478 46.7
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.1e-92 344.7 489 46.0
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 9.0e-92 341.7 472 50.8
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.2e-91 341.3 476 51.1
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 1.5e-91 340.9 471 50.3
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 3.4e-91 339.7 464 49.8
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.5e-91 339.3 466 46.8
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.7e-90 337.4 448 57.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 9.3e-89 331.6 482 50.4
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.2e-88 331.3 459 48.8
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.2e-88 331.3 482 50.0
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.3e-87 327.8 463 49.7
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 6.7e-87 325.5 476 50.2
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.4e-84 317.0 467 48.6
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 4.5e-83 312.8 475 52.0
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.5e-83 312.8 496 50.2
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 5.9e-83 312.4 489 49.9
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.9e-82 310.1 198 77.3
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 8.5e-82 308.5 428 52.3
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.7e-80 303.5 444 48.4
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.0e-79 301.6 500 41.2
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 6.7e-79 298.9 472 43.0
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.7e-78 295.8 456 43.2
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.2e-77 292.0 466 45.9
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.4e-76 291.2 171 82.5
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 9.1e-76 288.5 485 46.4
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 1.0e-74 285.0 512 40.4
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.9e-73 280.8 172 80.8
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.2e-72 278.1 192 74.5
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.0e-71 275.0 476 44.3
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 5.2e-71 272.7 448 45.3
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 7.0e-68 262.3 500 46.2
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 9.1e-68 261.9 429 42.2
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 9.1e-68 261.9 452 41.2
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 4.2e-65 253.1 447 45.6
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.3e-61 241.5 405 45.7
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.7e-58 231.1 403 46.4
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 6.1e-56 222.6 128 82.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 9.1e-52 208.8 172 65.7
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.6e-51 208.0 365 46.8
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 7.2e-49 199.1 402 41.5
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.2e-45 187.6 200 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.1e-44 185.3 410 37.3
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 4.0e-39 166.8 522 31.6
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.0e-38 164.5 438 33.8
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.0e-38 164.5 158 53.8
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.7e-34 151.4 173 49.1
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 5.8e-30 136.3 147 46.3
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.2e-29 134.4 424 30.4
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.8e-24 117.5 89 66.3
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 8.1e-24 115.9 65 87.7
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 4.1e-20 103.6 97 59.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.1e-19 101.3 97 60.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.8e-15 88.2 65 67.7
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.8e-15 88.2 65 67.7
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 2.4e-15 87.8 155 36.1
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 6.8e-15 86.3 159 39.6
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.9e-12 78.2 102 42.2
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.9e-12 78.2 102 42.2
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.1e-12 77.0 116 46.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.2e-11 75.5 60 61.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.3e-10 71.2 49 67.3
Mapoly0183s0015 Marchantia polymorpha HOM05D000230 ORTHO05D000176 1.4e-07 62.0 153 28.8
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 9.0e-07 59.3 122 27.9
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 9.0e-07 59.3 122 27.9
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 9.0e-07 59.3 122 27.9
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 2.0e-06 58.2 122 27.9
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 2.0e-06 58.2 122 27.9
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.0e-06 58.2 122 27.9
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 2.0e-06 58.2 122 27.9
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 2.0e-06 58.2 122 27.9
Rhsim01G0186600 Rhododendron simsii HOM05D000230 ORTHO05D000176 2.0e-06 58.2 140 30.0
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 2.0e-06 58.2 122 27.9
BcaB02g07484 Brassica carinata HOM05D000230 ORTHO05D000176 2.6e-06 57.8 122 27.9
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 2.6e-06 57.8 90 42.2
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 2.6e-06 57.8 140 30.0
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 2.6e-06 57.8 140 30.0
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 2.6e-06 57.8 122 27.9
Hund21655 Selenicereus undatus HOM05D000230 ORTHO05D000176 2.6e-06 57.8 140 30.7
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 3.4e-06 57.4 122 27.9
ATR0568G101 Amborella trichopoda HOM05D000230 ORTHO05D000176 4.4e-06 57.0 146 26.7
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 4.4e-06 57.0 126 30.2
Potri.001G230000 Populus trichocarpa HOM05D000230 ORTHO05D000176 4.4e-06 57.0 132 29.5
QL04p000645 Quercus lobata HOM05D000230 ORTHO05D000176 4.4e-06 57.0 175 26.9
Peaxi162Scf00111g00225 Petunia axillaris HOM05D000230 ORTHO05D000176 5.8e-06 56.6 146 25.3
Ah.06g193150 Amaranthus hybridus HOM05D000230 ORTHO05D000176 7.6e-06 56.2 140 30.0
CAN.G129.45 Capsicum annuum HOM05D000230 ORTHO05D000176 7.6e-06 56.2 132 29.5
SEGI_09680 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 7.6e-06 56.2 176 29.5
Solyc01g073750.4 Solanum lycopersicum HOM05D000230 ORTHO05D000176 7.6e-06 56.2 132 29.5
Sopen01g033360 Solanum pennellii HOM05D000230 ORTHO05D000176 7.6e-06 56.2 132 29.5
Ciclev10030476m.g Citrus clementina HOM05D000230 ORTHO05D000176 9.9e-06 55.8 134 27.6
Ciclev10030478m.g Citrus clementina HOM05D000230 ORTHO05D000176 9.9e-06 55.8 137 27.0
FvH4_3g44290 Fragaria vesca HOM05D000230 ORTHO05D000176 9.9e-06 55.8 140 28.6
FAN11G0064 Fragaria x ananassa HOM05D000230 ORTHO05D000176 9.9e-06 55.8 140 28.6
FAN21G0442 Fragaria x ananassa HOM05D000230 ORTHO05D000176 9.9e-06 55.8 136 28.7
FAN25G2157 Fragaria x ananassa HOM05D000230 ORTHO05D000176 9.9e-06 55.8 140 28.6
RcHm_v2.0_Chr5g0080661 Rosa chinensis HOM05D000230 ORTHO05D000176 9.9e-06 55.8 140 28.6
Sc16g0011980 Simmondsia chinensis HOM05D000230 ORTHO05D000176 9.9e-06 55.8 126 29.4
Zm00001eb163000 Zea mays HOM05D000230 ORTHO05D000176 9.9e-06 55.8 146 27.4


User provided reference genes

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