Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 3.9e-284 980.7 472 100.0
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 2.0e-248 862.1 477 88.1
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 7.5e-235 817.0 477 81.8
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 5.9e-232 807.4 476 80.9
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 1.1e-230 803.1 481 80.9
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 8.0e-229 797.0 477 80.1
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 5.2e-228 794.3 476 80.3
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 2.0e-227 792.3 476 79.8
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 1.1e-225 786.6 479 78.9
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.6e-224 782.7 474 79.5
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.5e-222 776.2 471 78.1
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 5.4e-217 757.7 482 75.9
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 7.1e-217 757.3 481 76.1
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 1.7e-215 752.7 465 78.5
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 6.6e-215 750.7 474 77.4
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 2.4e-209 732.3 470 75.1
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 3.6e-205 718.4 471 74.9
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 1.2e-200 703.4 481 69.6
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 3.5e-200 701.8 482 71.8
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 4.6e-200 701.4 483 71.6
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 1.9e-198 696.0 475 69.7
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.3e-197 693.3 467 71.7
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 6.2e-197 691.0 482 69.5
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 6.2e-197 691.0 475 69.5
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.4e-196 689.9 474 71.7
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 2.4e-196 689.1 481 69.4
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 3.1e-196 688.7 474 71.5
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 4.0e-196 688.3 476 69.5
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 5.3e-196 688.0 456 70.0
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 7.6e-195 684.1 488 70.7
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.7e-194 682.9 479 68.9
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.7e-194 682.9 399 78.4
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.1e-193 680.2 482 68.9
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 7.1e-193 677.6 405 75.8
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.6e-192 676.4 398 76.9
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 1.6e-192 676.4 468 69.9
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 2.7e-192 675.6 482 68.0
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 2.7e-192 675.6 459 69.1
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 1.0e-191 673.7 482 67.8
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 2.3e-191 672.5 478 68.2
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 2.3e-191 672.5 464 69.8
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 1.5e-190 669.8 478 67.2
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 5.6e-190 667.9 398 75.6
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 1.3e-189 666.8 480 66.2
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.4e-188 663.3 403 75.9
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 2.4e-188 662.5 403 76.4
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 5.3e-188 661.4 434 70.3
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 4.9e-186 654.8 412 73.5
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 6.4e-186 654.4 500 64.0
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.4e-185 653.3 469 66.7
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 2.4e-185 652.5 404 73.5
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 3.2e-185 652.1 407 73.0
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.1e-184 649.4 415 73.0
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.7e-184 649.0 471 66.2
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 7.9e-184 647.5 414 72.7
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 7.9e-184 647.5 407 72.7
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 1.0e-183 647.1 401 73.3
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 1.8e-183 646.4 459 67.1
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.0e-183 645.6 445 68.3
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 1.1e-182 643.7 407 72.2
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 2.1e-181 639.4 403 72.5
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.5e-179 633.3 459 67.1
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 2.2e-178 629.4 406 72.2
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 8.4e-178 627.5 415 70.6
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 5.5e-177 624.8 435 66.7
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.2e-176 623.6 404 72.0
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 4.6e-176 621.7 403 71.7
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 4.6e-176 621.7 478 63.2
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 1.3e-175 620.2 418 69.6
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 1.8e-175 619.8 405 71.6
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 2.3e-175 619.4 405 71.6
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 3.9e-175 618.6 418 67.7
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 5.1e-175 618.2 442 66.7
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 8.7e-175 617.5 405 71.4
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 8.7e-175 617.5 405 71.4
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 7.4e-174 614.4 415 69.2
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 2.2e-173 612.8 403 68.7
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 2.8e-173 612.5 415 69.4
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 6.3e-173 611.3 406 69.5
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 1.4e-172 610.1 433 66.3
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.1e-172 608.6 404 69.3
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.9e-172 607.8 404 69.1
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.0e-171 606.3 400 68.0
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 7.6e-171 604.4 473 63.6
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 2.9e-170 602.4 393 71.0
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 6.5e-170 601.3 407 68.6
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.6e-168 596.7 400 68.2
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 7.9e-168 594.3 385 68.1
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 9.7e-166 587.4 405 67.9
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 4.8e-165 585.1 419 68.0
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 8.2e-165 584.3 383 68.9
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 3.1e-164 582.4 357 74.2
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 3.1e-164 582.4 424 67.5
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.9e-162 575.9 408 63.0
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.8e-162 575.5 450 60.2
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 3.6e-160 568.9 355 74.1
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 2.3e-159 566.2 404 64.1
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 1.7e-157 560.1 420 65.0
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 2.2e-154 549.7 401 66.3
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 5.0e-154 548.5 356 70.8
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.2e-153 545.8 347 75.5
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 5.2e-151 538.5 390 67.9
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 2.9e-146 522.7 353 65.2
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 6.5e-146 521.5 394 61.4
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 4.0e-143 512.3 342 70.8
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.4e-124 449.9 369 60.2
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 8.6e-122 441.4 395 51.4
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.2e-120 437.6 466 46.8
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 5.8e-118 428.7 323 67.2
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 1.1e-116 424.5 258 78.7
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.9e-116 423.7 404 50.7
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.3e-114 417.5 410 49.8
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 7.5e-110 401.7 435 46.9
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 8.6e-98 361.7 222 77.0
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 5.4e-84 315.8 243 58.0
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 3.7e-72 276.6 185 58.9
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 7.1e-68 262.3 229 60.7
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 2.7e-67 260.4 160 70.0
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 6.7e-66 255.8 237 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 3.1e-63 246.9 206 57.3
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.8e-58 231.1 167 65.3
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 3.8e-53 213.4 129 69.0
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 5.3e-47 193.0 129 66.7
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 5.9e-30 136.3 384 27.1
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 4.7e-27 126.7 407 27.8
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 1.4e-26 125.2 106 59.4
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 1.4e-18 98.6 476 23.9
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 3.0e-18 97.4 366 27.9
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 7.2e-12 76.3 54 68.5
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 4.7e-11 73.6 80 53.8
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.5e-09 68.6 91 40.7
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.7e-08 65.1 177 28.8
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 2.4e-07 61.2 61 50.8
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 2.4e-07 61.2 61 50.8
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 9.2e-07 59.3 44 59.1
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 2.0e-06 58.2 55 47.3


User provided reference genes

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