Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 4.0e-116 421.4 208 100.0
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 3.0e-63 245.7 321 48.0
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 2.8e-48 196.1 302 41.1
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 7.5e-46 188.0 284 42.6
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 2.9e-45 186.0 310 41.3
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 3.2e-44 182.6 274 43.4
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 6.2e-40 168.3 309 38.2
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 2.0e-38 163.3 284 39.4
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 3.4e-38 162.5 282 39.7
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 2.3e-34 149.8 327 35.2
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 5.1e-34 148.7 364 34.6
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 3.1e-31 139.4 310 35.8
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.4e-23 114.0 303 34.0
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 2.4e-23 113.2 299 33.4
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.2e-22 110.9 295 32.5
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 8.4e-21 104.8 332 32.2
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.9e-20 103.6 321 32.4
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 4.2e-20 102.4 312 33.3
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.0e-18 97.8 253 37.2
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 2.3e-18 96.7 305 31.5
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 2.3e-18 96.7 134 47.0
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.1e-17 94.4 239 35.6
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 1.5e-17 94.0 325 31.4
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.5e-17 94.0 282 31.9
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.6e-16 90.5 333 30.0
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 6.2e-16 88.6 310 29.0
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 8.1e-16 88.2 252 32.1
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 4.0e-15 85.9 279 32.3
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 9.0e-15 84.7 320 29.1
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.5e-14 84.0 331 29.0
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 5.8e-14 82.0 318 29.2
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 7.6e-14 81.6 384 27.3
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 1.3e-13 80.9 277 32.1
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 2.9e-13 79.7 305 28.9
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 3.8e-13 79.3 331 31.4
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 6.4e-13 78.6 320 28.1
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.1e-12 77.8 244 32.8
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 2.4e-12 76.6 246 32.1
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 5.4e-12 75.5 297 31.3
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 7.1e-12 75.1 243 32.5
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 1.2e-11 74.3 276 28.3
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.7e-11 73.2 314 29.0
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 3.5e-11 72.8 278 31.3
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 3.5e-11 72.8 266 32.3
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 4.6e-11 72.4 306 29.7
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 4.6e-11 72.4 264 30.7
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.3e-10 70.9 298 28.2
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 1.3e-10 70.9 286 28.3
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 2.3e-10 70.1 331 27.8
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 3.0e-10 69.7 305 27.5
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 5.1e-10 68.9 246 31.7
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 5.1e-10 68.9 307 29.0
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 5.1e-10 68.9 274 32.1
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 6.7e-10 68.6 289 29.8
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 6.7e-10 68.6 289 29.8
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 6.7e-10 68.6 264 31.8
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 8.7e-10 68.2 282 33.0
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 1.1e-09 67.8 262 32.1
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.9e-09 67.0 294 28.2
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.5e-09 66.6 314 28.0
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 4.3e-09 65.9 297 28.3
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 4.3e-09 65.9 247 31.6
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 5.6e-09 65.5 255 31.0
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 5.6e-09 65.5 295 27.8
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 7.4e-09 65.1 139 38.1
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 7.4e-09 65.1 258 30.2
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 9.6e-09 64.7 248 30.2
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 2.8e-08 63.2 285 30.2
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 2.8e-08 63.2 301 27.2
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 8.1e-08 61.6 88 40.9
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 8.1e-08 61.6 279 29.7
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 8.1e-08 61.6 135 40.7
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.1e-07 61.2 256 27.3
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 1.8e-07 60.5 283 30.0
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.8e-07 60.5 283 30.0
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 2.4e-07 60.1 89 46.1
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 3.1e-07 59.7 283 29.0
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 3.1e-07 59.7 353 27.2
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.1e-07 59.7 320 27.2
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 3.1e-07 59.7 217 31.8
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 4.0e-07 59.3 264 30.3
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 4.0e-07 59.3 280 28.9
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 6.9e-07 58.5 96 37.5
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 6.9e-07 58.5 288 27.4
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 9.0e-07 58.2 262 28.2
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.5e-06 57.4 283 26.1
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 2.6e-06 56.6 337 26.7
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 2.6e-06 56.6 86 39.5
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 2.6e-06 56.6 312 28.8
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 7.6e-06 55.1 209 30.1


User provided reference genes

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