Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 1.5e-248 862.4 464 100.0
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 1.5e-227 792.7 464 91.4
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.9e-227 792.3 464 91.2
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 1.7e-223 779.2 464 88.1
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 6.5e-223 777.3 464 87.5
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.9e-222 775.8 465 88.2
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 5.5e-222 774.2 466 90.6
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 9.4e-222 773.5 464 89.4
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 7.9e-221 770.4 466 90.1
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 1.0e-220 770.0 464 88.1
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 9.7e-219 763.5 464 86.4
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 1.6e-213 746.1 444 87.8
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 1.4e-209 733.0 464 81.2
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 1.3e-207 726.5 464 81.7
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 2.2e-207 725.7 464 83.2
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.1e-206 723.4 464 82.8
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 2.5e-206 722.2 469 82.5
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 8.0e-205 717.2 464 82.1
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 3.0e-204 715.3 464 78.2
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 5.2e-204 714.5 464 79.1
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 4.4e-203 711.4 466 79.0
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 1.3e-202 709.9 464 79.7
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.1e-201 706.8 464 78.7
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 1.8e-201 706.1 470 81.1
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 3.1e-201 705.3 464 78.9
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 5.3e-201 704.5 465 82.2
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 2.6e-200 702.2 464 77.2
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 3.5e-200 701.8 464 78.7
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 4.5e-200 701.4 467 77.9
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 5.9e-200 701.0 464 77.6
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.3e-199 699.9 464 78.7
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 5.0e-199 698.0 467 77.7
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 6.5e-199 697.6 464 77.6
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 1.5e-198 696.4 465 78.9
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 3.2e-198 695.3 464 77.6
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 7.2e-198 694.1 467 78.8
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 9.4e-198 693.7 463 82.1
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 9.4e-198 693.7 464 76.9
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 9.4e-198 693.7 465 78.7
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 1.6e-197 693.0 464 77.6
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 4.7e-197 691.4 465 77.2
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 8.0e-197 690.6 464 76.9
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 1.8e-196 689.5 464 79.3
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.3e-196 689.1 464 76.7
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 9.8e-195 683.7 464 75.9
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 9.8e-195 683.7 428 81.3
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 1.7e-194 682.9 428 81.1
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.7e-194 681.8 470 78.1
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 3.7e-194 681.8 491 74.5
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 8.3e-194 680.6 464 75.6
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.2e-192 676.8 462 75.8
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 2.7e-192 675.6 464 75.0
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.0e-191 673.7 464 75.6
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 6.5e-191 671.0 468 75.2
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 8.5e-191 670.6 482 72.2
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 1.1e-190 670.2 459 76.5
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.2e-190 668.7 465 76.6
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 4.2e-190 668.3 452 78.5
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 2.7e-189 665.6 469 74.4
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 4.7e-189 664.8 464 73.9
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 4.7e-189 664.8 464 75.0
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 6.1e-189 664.5 465 74.4
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 1.0e-188 663.7 469 76.5
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 1.0e-188 663.7 469 75.5
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 4.0e-188 661.8 465 75.3
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 5.2e-188 661.4 465 74.4
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 5.2e-188 661.4 465 74.4
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 5.2e-188 661.4 465 74.4
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 6.8e-188 661.0 467 73.2
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 1.2e-187 660.2 470 74.5
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 4.4e-187 658.3 464 73.1
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 4.4e-187 658.3 464 74.4
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 1.3e-186 656.8 465 74.0
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 2.2e-186 656.0 465 74.4
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 2.8e-186 655.6 465 73.5
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 3.7e-186 655.2 464 74.1
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 4.9e-186 654.8 470 73.4
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.3e-186 654.4 467 78.2
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 1.1e-185 653.7 468 73.1
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.1e-185 653.7 463 74.1
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 1.8e-185 652.9 466 73.8
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 2.4e-185 652.5 510 67.5
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 3.1e-185 652.1 468 74.6
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 4.1e-185 651.7 466 73.6
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 4.1e-185 651.7 465 73.5
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 1.6e-184 649.8 468 73.5
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.7e-184 649.0 467 77.9
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 3.5e-184 648.7 469 74.6
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 4.5e-184 648.3 495 71.3
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 2.9e-183 645.6 463 72.8
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 2.5e-182 642.5 469 74.4
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 5.6e-182 641.3 469 74.4
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 7.2e-182 641.0 466 73.2
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 2.1e-181 639.4 469 74.6
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 2.8e-181 639.0 404 78.2
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 2.3e-180 636.0 422 76.1
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 5.7e-179 631.3 490 69.4
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 2.9e-178 629.0 464 71.6
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 4.9e-178 628.2 471 71.1
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.1e-177 627.1 421 74.6
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.2e-177 625.5 466 69.3
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 7.8e-176 620.9 460 72.4
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 1.7e-175 619.8 464 69.8
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 4.3e-174 615.1 444 70.9
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.2e-173 613.6 400 76.5
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 2.1e-165 586.3 418 69.4
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 8.9e-164 580.9 451 66.7
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 2.6e-163 579.3 466 68.7
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.3e-162 577.0 416 72.4
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.4e-161 573.5 400 73.5
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 3.0e-143 512.7 317 81.7
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 8.7e-143 511.1 383 72.1
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 5.6e-142 508.4 400 63.0
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 1.5e-134 483.8 412 60.0
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.4e-132 477.2 403 59.1
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 4.8e-117 425.6 421 54.6
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 3.3e-102 376.3 274 67.9
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 7.4e-102 375.2 375 54.4
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 4.1e-100 369.4 535 39.6
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 5.0e-98 362.5 261 76.6
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 2.7e-80 303.5 188 80.9
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 9.5e-73 278.5 267 60.3
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 2.9e-61 240.4 258 54.3
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 6.4e-61 239.2 258 53.9
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 1.2e-56 224.9 207 63.8
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 5.0e-50 203.0 145 73.1
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 1.0e-42 178.7 148 65.5
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 2.5e-41 174.1 163 59.5
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 1.1e-39 168.7 121 76.0
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 1.9e-36 157.9 125 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.2e-30 138.7 374 29.1
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 8.1e-24 115.9 60 93.3
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 6.0e-19 99.8 59 79.7
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 5.6e-17 93.2 57 80.7
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 8.1e-16 89.4 70 70.0
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 2.6e-06 57.8 65 53.8


User provided reference genes

Program Settings