Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 7.7e-121 437.2 226 100.0
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 2.3e-101 372.5 226 85.4
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 5.2e-101 371.3 226 85.0
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 1.7e-99 366.3 228 84.6
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 2.7e-97 359.0 229 79.5
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 4.6e-97 358.2 229 79.5
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 4.6e-97 358.2 229 81.7
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 6.0e-97 357.8 232 82.8
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 5.1e-96 354.8 232 78.9
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 6.6e-96 354.4 230 80.9
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 6.6e-96 354.4 230 80.0
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 1.1e-95 353.6 230 82.2
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.1e-95 353.6 230 79.6
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 1.1e-95 353.6 228 80.7
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 1.1e-95 353.6 228 80.7
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 1.1e-95 353.6 231 80.5
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 1.5e-95 353.2 226 79.6
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 1.5e-95 353.2 236 81.8
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 1.9e-95 352.8 228 79.8
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 2.5e-95 352.4 231 79.7
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 2.5e-95 352.4 230 80.0
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 4.3e-95 351.7 231 79.7
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 5.6e-95 351.3 226 78.3
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 9.5e-95 350.5 232 81.5
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 9.5e-95 350.5 228 79.4
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 9.5e-95 350.5 228 82.0
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.2e-94 350.1 232 78.4
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 1.2e-94 350.1 231 80.1
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 1.6e-94 349.7 230 77.8
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 2.1e-94 349.4 231 79.2
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 3.6e-94 348.6 232 78.9
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 4.7e-94 348.2 230 78.3
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.1e-93 347.1 229 79.5
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 1.4e-93 346.7 227 80.6
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 5.2e-93 344.7 232 78.4
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 5.2e-93 344.7 226 80.1
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 6.8e-93 344.4 230 78.7
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 6.8e-93 344.4 231 80.1
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 1.2e-92 343.6 232 78.4
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 1.2e-92 343.6 230 77.0
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 1.5e-92 343.2 226 80.1
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 3.4e-92 342.0 231 77.1
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 3.4e-92 342.0 231 77.1
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 3.4e-92 342.0 229 78.2
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 5.8e-92 341.3 178 94.4
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 1.7e-91 339.7 230 78.3
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 2.2e-91 339.3 235 77.9
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 2.2e-91 339.3 229 76.9
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 3.7e-91 338.6 234 76.5
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 4.9e-91 338.2 234 77.8
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 4.9e-91 338.2 232 76.7
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 8.3e-91 337.4 226 76.5
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 1.1e-90 337.0 231 78.4
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.4e-90 336.7 230 76.1
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 1.9e-90 336.3 232 77.2
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 2.4e-90 335.9 232 76.3
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.4e-90 335.9 229 76.9
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 4.1e-90 335.1 230 75.7
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 4.1e-90 335.1 232 77.6
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 5.4e-90 334.7 231 75.8
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 9.2e-90 334.0 226 76.1
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 9.2e-90 334.0 227 77.1
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.2e-89 333.6 229 74.7
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 1.6e-89 333.2 230 77.0
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 1.6e-89 333.2 229 74.7
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.1e-89 332.8 229 74.7
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 3.5e-89 332.0 233 76.8
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 6.0e-89 331.3 226 74.8
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 6.0e-89 331.3 229 74.7
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.3e-88 330.1 228 78.5
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 1.7e-88 329.7 229 76.9
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 1.7e-88 329.7 232 75.4
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 2.3e-88 329.3 227 75.8
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 3.0e-88 328.9 235 75.7
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 3.9e-88 328.6 229 74.2
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 6.6e-88 327.8 228 75.0
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 6.6e-88 327.8 233 73.8
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 1.1e-87 327.0 228 75.0
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 1.9e-87 326.2 228 73.7
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 2.5e-87 325.9 229 75.1
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 4.3e-87 325.1 228 74.6
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 5.6e-87 324.7 228 77.2
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 1.2e-86 323.6 231 74.0
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 1.2e-86 323.6 228 74.1
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 1.2e-86 323.6 228 73.2
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 1.2e-86 323.6 228 74.1
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 1.2e-86 323.6 228 74.1
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 1.2e-86 323.6 228 73.2
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 1.2e-86 323.6 228 74.1
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 3.6e-86 322.0 228 73.7
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 4.7e-86 321.6 229 76.0
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 4.7e-86 321.6 228 72.4
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 6.2e-86 321.2 228 73.2
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 1.4e-85 320.1 231 72.7
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 1.4e-85 320.1 226 73.5
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 1.8e-85 319.7 228 73.7
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 1.8e-85 319.7 228 73.7
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.8e-85 319.7 226 75.7
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.8e-85 319.7 226 75.7
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 2.4e-85 319.3 236 72.0
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 3.1e-85 318.9 226 73.0
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 6.8e-85 317.8 225 71.6
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 8.9e-85 317.4 228 73.7
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 1.2e-84 317.0 234 72.2
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 2.0e-84 316.2 234 71.8
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 2.6e-84 315.8 227 71.8
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 5.8e-84 314.7 228 72.4
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 7.6e-84 314.3 178 84.8
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 9.9e-84 313.9 233 71.7
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 9.9e-84 313.9 227 72.2
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.3e-83 313.5 232 72.4
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 4.2e-82 308.5 231 71.4
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 5.4e-82 308.1 220 75.5
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 8.7e-80 300.8 157 89.8
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 9.6e-79 297.4 205 78.5
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 9.6e-79 297.4 216 70.4
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 4.8e-78 295.0 226 69.0
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 3.4e-76 288.9 230 67.4
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 1.6e-73 280.0 218 67.9
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 1.3e-70 270.4 228 66.7
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 6.2e-70 268.1 218 65.6
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 6.9e-69 264.6 223 66.8
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.2e-65 253.8 222 64.4
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.6e-62 243.4 210 59.5
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 2.1e-62 243.0 169 69.2
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.8e-62 242.7 198 62.1
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.7e-62 242.3 210 60.0
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 4.0e-61 238.8 222 56.8
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.4e-60 235.7 226 56.6
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 2.2e-59 233.0 214 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 7.4e-55 218.0 197 55.8
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.6e-54 216.9 150 80.0
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 3.9e-48 195.7 188 54.3
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 1.9e-47 193.4 155 58.1
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.2e-41 174.1 149 65.8
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 1.4e-37 160.6 175 47.4
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 5.0e-35 152.1 77 87.0
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.6e-28 130.6 126 66.7
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 3.2e-26 122.9 133 62.4
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 6.3e-22 108.6 135 50.4
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 1.4e-21 107.5 57 84.2
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.6e-17 94.0 108 60.2
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 1.9e-10 70.5 44 84.1


User provided reference genes

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