Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 7.6e-176 620.5 346 100.0
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.4e-124 450.3 339 73.5
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 2.6e-120 436.0 342 73.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.7e-119 433.3 343 71.1
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.1e-115 420.6 324 71.3
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 3.7e-114 415.6 318 71.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.2e-112 410.6 336 69.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.2e-112 410.6 347 68.0
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 6.7e-108 394.8 326 69.9
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 2.8e-106 389.4 317 69.1
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.4e-105 386.3 324 70.7
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 2.4e-105 386.3 319 66.1
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 9.1e-105 384.4 309 69.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.6e-104 383.6 301 70.4
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 2.7e-104 382.9 299 66.9
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.3e-103 380.6 309 68.0
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.7e-103 380.2 300 65.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.9e-103 379.4 324 65.1
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 6.5e-103 378.3 306 69.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 6.5e-103 378.3 305 67.9
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.5e-102 377.1 326 66.3
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.7e-101 372.1 299 70.2
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 6.1e-101 371.7 284 69.0
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.8e-100 370.2 319 68.0
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 2.3e-100 369.8 296 71.6
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 4.0e-100 369.0 327 65.7
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.2e-100 368.6 299 69.6
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 5.2e-100 368.6 298 67.8
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.2e-99 367.5 325 67.7
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.5e-99 367.1 316 65.8
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.0e-99 366.7 331 61.3
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 2.0e-99 366.7 254 72.8
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 4.4e-99 365.5 299 69.6
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 5.7e-99 365.2 343 61.8
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.7e-99 365.2 324 61.7
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 9.8e-99 364.4 288 66.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 9.8e-99 364.4 305 64.3
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.8e-98 362.8 339 65.8
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.8e-98 362.8 326 60.4
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 4.8e-98 362.1 298 62.8
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 6.3e-98 361.7 294 68.7
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 8.3e-98 361.3 313 68.7
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 8.3e-98 361.3 296 68.6
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.8e-97 360.1 297 66.7
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.4e-97 359.8 332 64.5
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 2.4e-97 359.8 308 61.7
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 2.0e-96 356.7 298 64.8
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.7e-95 353.6 315 66.7
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.7e-95 353.6 319 66.8
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 3.8e-95 352.4 289 69.2
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 5.0e-95 352.1 341 59.5
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.5e-94 350.5 224 76.3
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.9e-94 350.1 329 65.0
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.3e-94 349.4 219 78.1
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 4.2e-94 349.0 321 62.6
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.0e-92 344.4 272 72.4
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.5e-91 340.5 323 65.6
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 4.4e-91 339.0 250 69.6
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.7e-91 338.6 360 56.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.3e-90 337.4 296 64.5
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.2e-90 336.7 298 62.4
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 2.2e-90 336.7 311 64.6
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 2.2e-90 336.7 304 64.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.7e-90 335.9 296 61.5
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 3.7e-90 335.9 255 65.9
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 4.9e-90 335.5 326 61.7
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 6.3e-90 335.1 252 66.3
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.1e-89 334.3 337 63.8
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.4e-89 334.0 318 60.1
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.1e-89 332.4 307 65.5
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.1e-89 332.4 245 69.8
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 7.0e-89 331.6 309 60.2
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 9.2e-89 331.3 319 64.3
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 3.5e-88 329.3 298 64.1
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 4.5e-88 328.9 349 61.9
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 4.5e-88 328.9 311 65.6
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.5e-88 328.9 311 65.6
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 7.8e-88 328.2 337 62.0
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.3e-87 327.4 349 61.6
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.7e-87 327.0 337 61.7
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.7e-87 327.0 324 63.0
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.7e-87 327.0 310 64.8
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.3e-87 326.6 299 61.9
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 2.9e-87 326.2 345 62.3
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 5.0e-87 325.5 337 62.0
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 3.3e-86 322.8 317 64.4
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 3.3e-86 322.8 308 64.9
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 3.3e-86 322.8 308 64.9
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.6e-85 320.5 314 62.1
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.8e-85 319.7 272 68.4
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 3.6e-85 319.3 293 65.2
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 4.7e-85 318.9 299 66.2
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 4.7e-85 318.9 316 60.4
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.8e-84 317.0 286 62.6
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 8.9e-84 314.7 323 60.4
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 7.5e-83 311.6 306 62.4
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.3e-82 310.8 278 60.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.7e-82 310.5 298 60.4
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.7e-82 310.5 274 61.7
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 3.7e-82 309.3 243 70.4
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 8.3e-82 308.1 247 64.8
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 3.5e-80 302.8 318 61.6
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 6.0e-80 302.0 299 64.9
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 5.0e-79 298.9 276 63.4
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 5.6e-78 295.4 332 58.4
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.6e-77 293.9 312 60.6
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.8e-69 266.5 312 59.0
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 4.7e-69 265.8 233 59.2
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 8.1e-69 265.0 184 69.0
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 6.8e-68 261.9 308 51.0
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.1e-65 251.9 292 50.7
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 4.9e-58 229.2 149 77.2
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 8.4e-58 228.4 285 52.6
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.7e-55 220.7 226 51.8
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.3e-55 220.3 295 45.4
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.9e-50 203.4 268 49.6
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.1e-48 197.2 363 43.5
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.3e-45 188.0 121 76.9
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 4.8e-45 186.0 124 68.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.0e-39 166.8 312 36.5
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.1e-36 158.3 258 39.1
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.4e-36 157.9 177 45.2
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.5e-35 154.5 93 79.6
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.5e-35 154.5 95 77.9
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.8e-35 152.5 174 49.4
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-25 119.4 223 31.4
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 3.0e-23 113.6 68 79.4
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 8.7e-23 112.1 196 33.2
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 7.4e-22 109.0 174 48.9
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 5.5e-17 92.8 153 38.6
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.6e-16 89.7 141 41.8
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.7e-14 82.8 69 59.4
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.8e-13 80.5 188 31.4
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.7e-10 71.2 218 25.7
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 5.5e-09 66.2 84 52.4


User provided reference genes

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