Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 7.3e-164 580.5 292 100.0
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 2.6e-145 518.8 302 87.7
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 7.6e-145 517.3 302 87.1
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 2.2e-144 515.8 303 86.5
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 6.0e-142 507.7 299 85.6
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 5.1e-141 504.6 304 84.2
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.9e-140 502.7 293 85.7
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 3.3e-140 501.9 299 84.3
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 8.1e-139 497.3 298 83.2
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 8.1e-139 497.3 298 83.2
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.1e-135 486.9 299 81.3
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 6.0e-134 481.1 303 78.5
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 2.8e-131 472.2 307 77.5
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 2.6e-129 465.7 303 77.6
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 1.3e-128 463.4 303 76.2
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.1e-127 460.3 304 75.7
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 1.4e-127 459.9 294 77.2
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 2.5e-127 459.1 304 76.3
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.2e-127 458.8 304 76.3
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 5.5e-127 458.0 303 75.6
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 7.2e-127 457.6 302 76.5
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 9.3e-127 457.2 306 75.5
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 2.7e-126 455.7 304 76.0
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 4.6e-126 454.9 279 81.0
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 6.1e-126 454.5 298 74.2
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.0e-125 453.8 304 75.3
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.3e-125 453.4 303 74.9
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 8.7e-125 450.7 301 74.8
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.5e-124 449.9 304 74.7
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.5e-124 449.1 268 82.1
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.2e-123 446.0 325 71.1
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 6.3e-123 444.5 305 72.8
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.1e-122 443.7 296 73.6
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.4e-122 443.4 303 73.3
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 3.1e-122 442.2 310 72.9
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 5.3e-122 441.4 305 74.8
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.3e-122 441.4 304 73.4
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 6.9e-122 441.0 277 76.5
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.2e-121 440.3 303 72.3
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.2e-121 440.3 306 72.5
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.5e-121 439.9 276 78.6
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.0e-121 439.5 305 72.8
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.3e-120 436.8 269 79.6
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.2e-120 436.0 302 74.2
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.9e-119 433.0 286 73.8
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 4.2e-119 431.8 286 73.1
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 5.5e-119 431.4 286 74.5
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 9.4e-119 430.6 339 66.7
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.7e-118 429.1 286 75.9
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 4.6e-118 428.3 269 79.9
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 3.0e-117 425.6 301 71.1
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.9e-117 425.2 267 77.5
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 6.7e-117 424.5 300 69.3
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 8.8e-117 424.1 299 72.6
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.1e-116 423.7 297 71.4
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.5e-116 423.3 305 69.5
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.5e-116 423.3 322 69.3
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 2.0e-116 422.9 281 74.4
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.7e-115 419.9 299 69.2
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.7e-115 419.9 296 69.6
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.2e-115 419.5 278 73.0
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.3e-115 417.9 294 72.4
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 8.2e-115 417.5 300 68.7
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 8.2e-115 417.5 300 68.7
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 8.2e-115 417.5 277 73.3
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.1e-114 417.2 298 69.1
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 2.4e-114 416.0 306 69.6
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.4e-114 416.0 358 63.1
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 5.3e-114 414.8 300 69.0
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 9.1e-114 414.1 278 71.9
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 1.5e-113 413.3 277 72.2
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.0e-113 412.9 287 71.4
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 5.9e-113 411.4 300 68.3
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.7e-112 409.8 293 69.6
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.7e-112 409.8 298 71.8
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.7e-112 409.8 283 71.7
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 2.2e-112 409.5 285 71.9
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 5.0e-112 408.3 303 68.0
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 8.5e-112 407.5 293 68.9
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.1e-111 407.1 301 68.4
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 9.4e-111 404.1 280 70.0
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 4.7e-110 401.7 280 68.9
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 4.7e-110 401.7 293 69.6
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.8e-109 399.8 302 65.2
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 9.7e-108 394.0 318 63.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 2.8e-107 392.5 318 64.2
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 4.8e-107 391.7 304 66.4
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 8.2e-107 391.0 292 67.5
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 4.5e-105 385.2 261 71.3
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 7.7e-105 384.4 287 67.9
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 7.7e-105 384.4 280 66.8
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.9e-103 379.8 286 69.9
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 4.2e-103 378.6 282 67.0
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 4.2e-103 378.6 318 62.9
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 2.0e-100 369.8 281 64.8
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 6.3e-99 364.8 294 63.3
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 8.2e-99 364.4 257 69.3
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.1e-98 362.1 202 90.1
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 5.3e-98 361.7 257 69.3
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.2e-96 356.3 279 65.6
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 6.5e-96 354.8 257 68.1
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.1e-95 354.0 245 69.0
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.6e-94 350.1 286 61.5
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 2.1e-94 349.7 261 65.9
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 6.1e-94 348.2 253 67.6
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 5.2e-93 345.1 261 67.8
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 6.3e-91 338.2 258 66.3
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.5e-89 332.0 239 71.1
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 6.5e-88 328.2 306 60.5
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 4.2e-87 325.5 249 67.9
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 9.5e-87 324.3 247 64.4
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.2e-86 323.9 247 64.4
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.7e-83 312.4 279 58.4
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 7.0e-82 308.1 268 60.1
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 7.7e-81 304.7 215 70.2
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 5.0e-80 302.0 215 71.2
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.1e-79 300.8 220 66.4
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.0e-77 294.3 247 61.9
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.2e-75 286.6 257 59.1
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 4.4e-68 262.3 219 61.2
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 7.3e-63 245.0 302 44.0
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 2.3e-61 240.0 291 48.1
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.2e-59 233.4 246 52.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 6.0e-57 225.3 120 91.7
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 2.1e-49 200.3 120 80.8
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 9.6e-47 191.4 120 76.7
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 2.1e-46 190.3 270 42.2
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 4.4e-44 182.6 266 40.6
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.0e-40 171.4 129 64.3
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.8e-37 160.6 118 66.9
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 4.9e-35 152.5 86 86.0
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-34 151.4 154 57.8
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 5.4e-34 149.1 108 73.1
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 5.6e-31 139.0 88 73.9
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.3e-27 127.9 91 70.3
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 5.6e-23 112.5 105 59.0
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 4.8e-22 109.4 75 69.3
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 4.0e-21 106.3 217 30.4
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 1.0e-19 101.7 317 26.8
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 1.7e-19 100.9 299 30.1
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.1e-18 98.2 258 31.0
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 6.0e-17 92.4 81 63.0
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.3e-16 91.3 208 27.9
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 8.7e-16 88.6 58 69.0
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 2.8e-14 83.6 98 46.9
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 1.8e-13 80.9 47 80.9
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 9.0e-13 78.6 309 24.9
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.2e-12 78.2 92 46.7
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.2e-12 78.2 309 24.9
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.9e-11 73.6 151 34.4
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 6.1e-09 65.9 232 25.0
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 2.3e-08 63.9 60 56.7
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.0e-08 63.5 51 51.0
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 2.5e-07 60.5 70 48.6


User provided reference genes

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