Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0003196 Lotus japonicus HOM05D003220 ORTHO05D003944 8.0e-146 520.4 261 100.0
Lj2g0018966 Lotus japonicus HOM05D003220 ORTHO05D003944 2.3e-76 289.7 176 86.9
Lj4g0002027 Lotus japonicus HOM05D003220 ORTHO05D003944 5.1e-76 288.5 175 86.9
VMungo1215G0590 Vigna mungo HOM05D003220 ORTHO05D003944 1.9e-70 270.0 176 80.1
Glyma.05G046900 Glycine max HOM05D003220 ORTHO05D003944 2.7e-69 266.2 176 78.4
Ca_00914_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 7.9e-69 264.6 176 77.3
Ca_29978_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 7.9e-69 264.6 176 77.3
TPR.G30011 Trifolium pratense HOM05D003220 ORTHO05D003944 7.9e-69 264.6 176 77.8
Atru.chr9.1087 Acer truncatum HOM05D003220 ORTHO05D003944 1.4e-68 263.8 176 77.3
Phvul.003G209766 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.4e-68 263.8 176 77.8
Glyma.17G128600 Glycine max HOM05D003220 ORTHO05D003944 1.8e-68 263.5 176 77.8
Phvul.003G209832 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.8e-68 263.5 176 78.4
Glyma.05G046700 Glycine max HOM05D003220 ORTHO05D003944 2.3e-68 263.1 176 77.8
Medtr5g042880 Medicago truncatula HOM05D003220 ORTHO05D003944 2.3e-68 263.1 176 77.8
CSS0036065 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 3.9e-68 262.3 176 77.3
COL.COLO4_28080 Corchorus olitorius HOM05D003220 ORTHO05D003944 6.7e-68 261.5 176 78.4
Glyma.05G236000 Glycine max HOM05D003220 ORTHO05D003944 8.8e-68 261.2 176 77.8
Lalb_Chr07g0183341 Lupinus albus HOM05D003220 ORTHO05D003944 1.1e-67 260.8 176 77.3
Dinv11156 Davidia involucrata HOM05D003220 ORTHO05D003944 2.0e-67 260.0 176 77.3
Duzib205G1890 Durio zibethinus HOM05D003220 ORTHO05D003944 2.0e-67 260.0 176 77.3
Dinv04868 Davidia involucrata HOM05D003220 ORTHO05D003944 5.7e-67 258.5 176 76.1
arahy.Tifrunner.gnm1.ann1.HUK63J Arachis hypogaea HOM05D003220 ORTHO05D003944 9.7e-67 257.7 176 75.6
Manes.03G085300 Manihot esculenta HOM05D003220 ORTHO05D003944 9.7e-67 257.7 176 76.1
Thecc.03G126500 Theobroma cacao HOM05D003220 ORTHO05D003944 9.7e-67 257.7 176 76.7
Lalb_Chr13g0297361 Lupinus albus HOM05D003220 ORTHO05D003944 1.3e-66 257.3 176 75.6
Solyc05g012270.3 Solanum lycopersicum HOM05D003220 ORTHO05D003944 1.3e-66 257.3 176 76.1
Sopen05g007100 Solanum pennellii HOM05D003220 ORTHO05D003944 1.3e-66 257.3 176 76.1
Rhsim08G0188400 Rhododendron simsii HOM05D003220 ORTHO05D003944 1.7e-66 256.9 176 75.6
TAR371G0289 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.7e-66 256.9 176 75.6
arahy.Tifrunner.gnm1.ann1.VD0ABX Arachis hypogaea HOM05D003220 ORTHO05D003944 2.2e-66 256.5 176 75.0
Hma1.2p1_1439F.1_g283510 Hydrangea macrophylla HOM05D003220 ORTHO05D003944 2.2e-66 256.5 176 74.4
Nitab4.5_0001487g0130 Nicotiana tabacum HOM05D003220 ORTHO05D003944 2.2e-66 256.5 176 75.6
AT4G24830 Arabidopsis thaliana HOM05D003220 ORTHO05D003944 2.8e-66 256.1 176 74.4
EL10Ac2g04001 Beta vulgaris HOM05D003220 ORTHO05D003944 2.8e-66 256.1 176 73.3
AUR62042443 Chenopodium quinoa HOM05D003220 ORTHO05D003944 3.7e-66 255.8 176 75.0
Medtr4g103680 Medicago truncatula HOM05D003220 ORTHO05D003944 4.8e-66 255.4 176 75.0
Nitab4.5_0000231g0280 Nicotiana tabacum HOM05D003220 ORTHO05D003944 4.8e-66 255.4 176 75.6
PGSC0003DMG400028317 Solanum tuberosum HOM05D003220 ORTHO05D003944 4.8e-66 255.4 176 75.6
TAR629G1627 Trochodendron aralioides HOM05D003220 ORTHO05D003944 6.3e-66 255.0 176 75.0
CSS0002367 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 8.2e-66 254.6 176 74.4
Duzib068G0624 Durio zibethinus HOM05D003220 ORTHO05D003944 8.2e-66 254.6 176 75.0
AUR62009263 Chenopodium quinoa HOM05D003220 ORTHO05D003944 1.1e-65 254.2 176 73.9
Migut.D00060 Erythranthe guttata HOM05D003220 ORTHO05D003944 1.1e-65 254.2 176 74.4
TWI38G0393 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 1.1e-65 254.2 176 74.4
Ah.03g136360 Amaranthus hybridus HOM05D003220 ORTHO05D003944 1.4e-65 253.8 176 73.9
MBI08_g11776_MAGBIO Magnolia biondii HOM05D003220 ORTHO05D003944 1.4e-65 253.8 176 74.4
Aa31LG7G11010 Aethionema arabicum HOM05D003220 ORTHO05D003944 1.8e-65 253.4 176 73.9
Carub.0007s1622 Capsella rubella HOM05D003220 ORTHO05D003944 1.8e-65 253.4 176 73.3
Ciclev10019860m.g Citrus clementina HOM05D003220 ORTHO05D003944 1.8e-65 253.4 176 75.0
C01p20130 Brassica napus HOM05D003220 ORTHO05D003944 2.4e-65 253.1 176 73.9
BolC1t01942H Brassica oleracea HOM05D003220 ORTHO05D003944 2.4e-65 253.1 176 73.9
A01p16140 Brassica napus HOM05D003220 ORTHO05D003944 3.1e-65 252.7 176 73.9
BraA01t01550Z Brassica rapa HOM05D003220 ORTHO05D003944 3.1e-65 252.7 176 73.9
Eucgr.K02738 Eucalyptus grandis HOM05D003220 ORTHO05D003944 3.1e-65 252.7 176 72.7
Peaxi162Scf00175g00120 Petunia axillaris HOM05D003220 ORTHO05D003944 3.1e-65 252.7 176 73.9
QL10p004209 Quercus lobata HOM05D003220 ORTHO05D003944 3.1e-65 252.7 176 73.3
Hund03392 Selenicereus undatus HOM05D003220 ORTHO05D003944 3.1e-65 252.7 176 73.3
BcaC06g32854 Brassica carinata HOM05D003220 ORTHO05D003944 4.1e-65 252.3 176 73.3
BcaNung07242 Brassica carinata HOM05D003220 ORTHO05D003944 4.1e-65 252.3 176 73.3
C07p53830 Brassica napus HOM05D003220 ORTHO05D003944 4.1e-65 252.3 176 73.3
BraA03t14626Z Brassica rapa HOM05D003220 ORTHO05D003944 4.1e-65 252.3 176 73.3
HanXRQChr05g0155091 Helianthus annuus HOM05D003220 ORTHO05D003944 4.1e-65 252.3 176 73.9
HanXRQChr08g0229301 Helianthus annuus HOM05D003220 ORTHO05D003944 4.1e-65 252.3 176 74.4
A03p55590 Brassica napus HOM05D003220 ORTHO05D003944 5.3e-65 251.9 176 73.3
CiPaw.12G040800 Carya illinoinensis HOM05D003220 ORTHO05D003944 5.3e-65 251.9 176 73.9
Thhalv10025000m.g Eutrema salsugineum HOM05D003220 ORTHO05D003944 5.3e-65 251.9 176 73.3
PSO478G5055 Papaver somniferum HOM05D003220 ORTHO05D003944 5.3e-65 251.9 176 73.9
PSO782G5387 Papaver somniferum HOM05D003220 ORTHO05D003944 5.3e-65 251.9 176 73.9
THA.LOC104825013 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 5.3e-65 251.9 176 72.7
CANSAT80G2734 Cannabis sativa HOM05D003220 ORTHO05D003944 7.0e-65 251.5 176 74.4
AL7G28350 Arabidopsis lyrata HOM05D003220 ORTHO05D003944 9.1e-65 251.1 176 73.3
CAN.G1528.7 Capsicum annuum HOM05D003220 ORTHO05D003944 9.1e-65 251.1 176 74.4
MD06G1144100 Malus domestica HOM05D003220 ORTHO05D003944 9.1e-65 251.1 176 73.3
Sp7g22820 Schrenkiella parvula HOM05D003220 ORTHO05D003944 9.1e-65 251.1 176 72.7
CsaV3_1G009560 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.2e-64 250.8 176 74.4
PGR004G0659 Punica granatum HOM05D003220 ORTHO05D003944 1.2e-64 250.8 176 73.3
QL10p004159 Quercus lobata HOM05D003220 ORTHO05D003944 1.2e-64 250.8 176 72.7
SGA_v2.0_scaffold334G49089 Striga asiatica HOM05D003220 ORTHO05D003944 2.0e-64 250.0 176 71.6
TWI63G1463 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 2.0e-64 250.0 176 73.3
Lj9C477T17 Lonicera japonica HOM05D003220 ORTHO05D003944 2.6e-64 249.6 176 73.9
MD14G1159300 Malus domestica HOM05D003220 ORTHO05D003944 2.6e-64 249.6 176 72.7
Prupe.5G153100 Prunus persica HOM05D003220 ORTHO05D003944 2.6e-64 249.6 176 72.2
RcHm_v2.0_Chr7g0190471 Rosa chinensis HOM05D003220 ORTHO05D003944 2.6e-64 249.6 176 72.2
RcHm_v2.0_Chr7g0190481 Rosa chinensis HOM05D003220 ORTHO05D003944 2.6e-64 249.6 176 72.2
THA.LOC104811595 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 2.6e-64 249.6 176 71.0
vmacro05131 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 2.6e-64 249.6 176 72.7
Sed0014346 Sechium edule HOM05D003220 ORTHO05D003944 5.9e-64 248.4 176 73.3
vmacro18315 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 5.9e-64 248.4 176 72.2
Medtr3g088970 Medicago truncatula HOM05D003220 ORTHO05D003944 7.7e-64 248.1 176 69.9
Prupe.7G058500 Prunus persica HOM05D003220 ORTHO05D003944 1.0e-63 247.7 176 71.6
ECA246G3064 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.3e-63 247.3 176 72.7
MD06G1144000 Malus domestica HOM05D003220 ORTHO05D003944 1.3e-63 247.3 176 71.6
CARHR232250 Cardamine hirsuta HOM05D003220 ORTHO05D003944 1.7e-63 246.9 176 72.2
CiPaw.11G009400 Carya illinoinensis HOM05D003220 ORTHO05D003944 1.7e-63 246.9 176 72.2
Psat5g139800 Pisum sativum HOM05D003220 ORTHO05D003944 2.2e-63 246.5 175 69.7
Duzib084G0962 Durio zibethinus HOM05D003220 ORTHO05D003944 2.9e-63 246.1 176 73.9
FvH4_5g07910 Fragaria vesca HOM05D003220 ORTHO05D003944 2.9e-63 246.1 176 71.6
FAN04G2217 Fragaria x ananassa HOM05D003220 ORTHO05D003944 2.9e-63 246.1 176 71.6
Cc00_g12840 Coffea canephora HOM05D003220 ORTHO05D003944 3.8e-63 245.7 176 72.2
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 3.8e-63 245.7 176 71.6
FAN18G1033 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.8e-63 245.7 176 71.6
Gohir.A07G051900 Gossypium hirsutum HOM05D003220 ORTHO05D003944 3.8e-63 245.7 176 72.2
Gorai.001G059900 Gossypium raimondii HOM05D003220 ORTHO05D003944 3.8e-63 245.7 176 72.2
TPR.G26144 Trifolium pratense HOM05D003220 ORTHO05D003944 3.8e-63 245.7 176 69.3
Hund19502 Selenicereus undatus HOM05D003220 ORTHO05D003944 5.0e-63 245.4 176 70.5
ClCG03G003670 Citrullus lanatus HOM05D003220 ORTHO05D003944 6.5e-63 245.0 176 72.2
Lj1g0011038 Lotus japonicus HOM05D003220 ORTHO05D003944 6.5e-63 245.0 176 69.9
Migut.N00934 Erythranthe guttata HOM05D003220 ORTHO05D003944 8.5e-63 244.6 176 71.6
FAN08G0954 Fragaria x ananassa HOM05D003220 ORTHO05D003944 8.5e-63 244.6 176 71.0
FAN13G0994 Fragaria x ananassa HOM05D003220 ORTHO05D003944 8.5e-63 244.6 176 71.0
MELO3C026229.2 Cucumis melo HOM05D003220 ORTHO05D003944 1.1e-62 244.2 176 71.0
DCAR_007481 Daucus carota HOM05D003220 ORTHO05D003944 1.1e-62 244.2 176 71.6
Lsat_1_v5_gn_5_13561 Lactuca sativa HOM05D003220 ORTHO05D003944 1.1e-62 244.2 176 72.2
MSTRG.18081 Avicennia marina HOM05D003220 ORTHO05D003944 1.5e-62 243.8 176 70.5
CDE09G1413 Ceratophyllum demersum HOM05D003220 ORTHO05D003944 1.5e-62 243.8 176 71.0
CsaV3_1G000670 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.5e-62 243.8 176 71.6
Lj1g0011796 Lotus japonicus HOM05D003220 ORTHO05D003944 1.5e-62 243.8 176 69.3
Lj1g0021098 Lotus japonicus HOM05D003220 ORTHO05D003944 1.5e-62 243.8 176 69.3
Sed0017817 Sechium edule HOM05D003220 ORTHO05D003944 1.5e-62 243.8 176 69.9
ClCG06G017780 Citrullus lanatus HOM05D003220 ORTHO05D003944 1.9e-62 243.4 176 71.6
Gohir.D07G056400 Gossypium hirsutum HOM05D003220 ORTHO05D003944 1.9e-62 243.4 176 71.6
Oeu054655.1 Olea europaea HOM05D003220 ORTHO05D003944 1.9e-62 243.4 176 70.5
FAN08G0739 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.2e-62 242.7 176 70.5
Lj1g0022826 Lotus japonicus HOM05D003220 ORTHO05D003944 3.2e-62 242.7 176 69.3
Sc10g0010420 Simmondsia chinensis HOM05D003220 ORTHO05D003944 3.2e-62 242.7 176 71.6
Os12g0235800 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 4.2e-62 242.3 176 71.6
Potri.010G239000 Populus trichocarpa HOM05D003220 ORTHO05D003944 4.2e-62 242.3 176 72.7
SalBow2G0412 Salvia bowleyana HOM05D003220 ORTHO05D003944 5.5e-62 241.9 176 72.2
SGA_v2.0_scaffold376G50300 Striga asiatica HOM05D003220 ORTHO05D001798 7.2e-62 241.5 176 68.2
SGA_v2.0_scaffold198G41113 Striga asiatica HOM05D003220 ORTHO05D003944 9.4e-62 241.1 176 70.5
Aqoxy6G02806 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 1.6e-61 240.4 176 68.8
Aqoxy7G03930 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 1.6e-61 240.4 176 68.8
FAN18G3924 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.6e-61 240.4 176 69.9
Lalb_Chr06g0172311 Lupinus albus HOM05D003220 ORTHO05D003944 1.6e-61 240.4 176 72.7
Zm00001eb411740 Zea mays HOM05D003220 ORTHO05D003944 1.6e-61 240.4 176 69.9
Sc10g0008710 Simmondsia chinensis HOM05D003220 ORTHO05D003944 2.1e-61 240.0 176 71.0
HPP92_001246 Vanilla planifolia HOM05D003220 ORTHO05D003944 2.1e-61 240.0 176 69.9
HPP92_001262 Vanilla planifolia HOM05D003220 ORTHO05D003944 2.1e-61 240.0 176 69.9
ClCG03G003660 Citrullus lanatus HOM05D003220 ORTHO05D003944 2.7e-61 239.6 176 70.5
Potri.008G020200 Populus trichocarpa HOM05D003220 ORTHO05D003944 3.6e-61 239.2 176 71.6
MSTRG.21708 Avicennia marina HOM05D003220 ORTHO05D003944 6.1e-61 238.4 176 69.9
ECA247G1256 Erigeron canadensis HOM05D003220 ORTHO05D003944 6.1e-61 238.4 176 70.5
FvH4_5g30030 Fragaria vesca HOM05D003220 ORTHO05D003944 1.0e-60 237.7 176 69.3
ATR1149G068 Amborella trichopoda HOM05D003220 ORTHO05D003944 1.8e-60 236.9 176 69.3
CANSAT64G0212 Cannabis sativa HOM05D003220 ORTHO05D003944 1.8e-60 236.9 176 69.3
ECA247G3880 Erigeron canadensis HOM05D003220 ORTHO05D003944 6.7e-60 235.0 176 69.9
MELO3C002352.2 Cucumis melo HOM05D003220 ORTHO05D003944 8.8e-60 234.6 176 67.6
CsaV3_1G009540 Cucumis sativus L. HOM05D003220 ORTHO05D003944 8.8e-60 234.6 176 67.0
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05D003220 ORTHO05D003944 4.4e-59 232.3 176 66.5
SEGI_40301 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 4.4e-59 232.3 176 68.2
Cfa018844 Carpinus fangiana HOM05D003220 ORTHO05D003944 2.2e-58 229.9 176 65.9
Haze_07237 Corylus avellana HOM05D003220 ORTHO05D003944 2.2e-58 229.9 176 66.5
Sed0000451 Sechium edule HOM05D003220 ORTHO05D003944 2.8e-58 229.6 176 67.6
SEGI_19712 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 8.2e-58 228.0 176 67.0
Pp3c1_33150 Physcomitrium patens HOM05D003220 ORTHO05D003944 1.8e-57 226.9 176 66.5
SMO356G0518 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 5.9e-56 221.9 176 65.3
CBR_g61477 Chara braunii HOM05D003220 ORTHO05D003944 7.2e-54 214.9 176 61.4
Mapoly0038s0028 Marchantia polymorpha HOM05D003220 ORTHO05D003944 3.0e-52 209.5 187 58.8
unitig_750.g28437 Utricularia gibba HOM05D003220 ORTHO05D003944 1.1e-49 201.1 148 72.3
Glyma.08G043400 Glycine max HOM05D003220 ORTHO05D003944 5.9e-48 195.3 144 72.9
Actinidia25590 Actinidia chinensis HOM05D003220 ORTHO05D003944 2.1e-45 186.8 176 60.8
FAN13G1952 Fragaria x ananassa HOM05D003220 ORTHO05D003944 2.1e-45 186.8 148 66.2
FvH4_5g06920 Fragaria vesca HOM05D003220 ORTHO05D003944 1.5e-43 180.6 154 61.7
Medtr3g088940 Medicago truncatula HOM05D003220 ORTHO05D003944 1.5e-43 180.6 140 65.7
Pp3c12_4480 Physcomitrium patens HOM05D003220 ORTHO05D003944 3.7e-42 176.0 157 59.9
GSVIVG01008510001 Vitis vinifera HOM05D003220 ORTHO05D003944 3.4e-35 152.9 117 69.2
PRCOL_00001450 Prasinoderma coloniale HOM05D003220 ORTHO05D003944 2.9e-34 149.8 175 46.9
Cre09.g416050 Chlamydomonas reinhardtii HOM05D003220 ORTHO05D003944 9.2e-33 144.8 171 45.0
Os11g0303050 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 1.1e-30 137.9 99 66.7
SMO356G0112 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 7.3e-30 135.2 162 48.8
vmacro19215 Vaccinium macrocarpon HOM05D002332 ORTHO05D002509 1.5e-27 127.5 112 63.4
Psat0s3176g0120 Pisum sativum HOM05D003220 ORTHO05D003944 1.1e-20 104.8 163 46.0
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 3.7e-18 96.3 59 74.6
Cfa022737 Carpinus fangiana HOM05D003220 ORTHO05D003944 1.0e-15 88.2 171 34.5
BcaC07g39152 Brassica carinata HOM05D003220 ORTHO05D003944 4.7e-13 79.3 58 67.2
BcaC07g38166 Brassica carinata HOM05D003220 ORTHO05D003944 1.3e-07 61.2 104 43.3
Lj1g0013828 Lotus japonicus HOM05D000003 ORTHO05D000004 8.6e-07 58.5 63 50.8
Lj6g0015390 Lotus japonicus HOM05D000003 ORTHO05D000004 3.3e-06 56.6 74 43.2
Nn4g26515 Nelumbo nucifera HOM05D003220 ORTHO05D003944 4.3e-06 56.2 28 85.7


User provided reference genes

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