Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 0.0e+00 1337.4 700 100.0
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 0.0e+00 1292.7 700 97.7
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 0.0e+00 1146.3 702 83.2
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 0.0e+00 1140.2 705 83.1
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 0.0e+00 1138.3 676 84.3
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 0.0e+00 1133.2 705 82.7
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 0.0e+00 1122.1 671 84.5
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 0.0e+00 1121.3 676 84.2
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 0.0e+00 1088.6 703 81.7
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 0.0e+00 1085.9 677 82.4
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.7e-307 1058.9 677 80.6
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 5.1e-280 967.6 679 72.3
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.6e-278 962.6 681 71.2
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 2.8e-278 961.8 680 72.2
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.4e-276 954.9 682 71.3
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 3.8e-275 951.4 696 69.8
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 4.9e-275 951.0 697 69.9
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.5e-273 944.9 708 70.3
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.5e-273 944.9 708 70.3
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 6.7e-272 940.6 678 70.6
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 1.9e-271 939.1 670 70.1
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.3e-270 936.4 682 69.4
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 2.1e-270 935.6 679 70.3
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 2.8e-270 935.3 677 70.0
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 6.2e-270 934.1 685 69.2
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.3e-267 926.4 687 69.6
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.3e-267 926.4 687 69.6
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.1e-266 923.3 678 69.9
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 2.5e-266 922.2 710 67.2
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 3.2e-266 921.8 677 70.2
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 3.5e-265 918.3 684 69.0
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.3e-264 916.4 682 68.3
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.3e-264 916.4 679 70.0
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 2.3e-264 915.6 676 69.1
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 3.0e-264 915.2 679 68.9
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 9.7e-263 910.2 675 67.9
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.6e-262 909.4 679 68.5
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 4.8e-262 907.9 682 68.6
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 6.3e-262 907.5 682 67.9
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 8.2e-262 907.1 680 68.5
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.3e-259 899.8 677 68.8
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 2.5e-258 895.6 679 67.6
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 4.6e-257 891.3 676 67.5
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 2.3e-256 889.0 678 66.1
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 5.7e-255 884.4 681 66.2
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 7.4e-255 884.0 819 61.3
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 1.8e-253 879.4 669 67.9
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 3.1e-253 878.6 669 66.7
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.5e-252 876.3 679 64.8
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 3.2e-250 868.6 680 66.2
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 5.5e-250 867.8 709 62.3
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 7.2e-250 867.5 669 66.2
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 7.2e-250 867.5 709 62.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.7e-249 864.8 731 63.5
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 8.8e-248 860.5 684 65.9
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 5.7e-247 857.8 679 63.9
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 7.4e-247 857.4 677 64.3
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 1.4e-245 853.2 683 66.3
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 1.4e-245 853.2 674 64.7
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 7.0e-245 850.9 627 69.7
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.2e-243 845.9 529 81.3
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 3.8e-243 845.1 672 64.1
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 6.5e-243 844.3 691 63.7
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.4e-239 831.6 648 65.3
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 4.4e-239 831.6 680 63.2
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 2.8e-238 828.9 680 62.9
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 2.7e-236 822.4 674 62.5
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 5.9e-236 821.2 684 62.7
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.5e-234 816.6 687 62.2
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 4.2e-234 815.1 683 62.8
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 4.2e-234 815.1 708 61.2
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.2e-233 813.5 707 60.3
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 9.8e-231 803.9 688 61.9
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 3.7e-230 802.0 687 60.6
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 4.1e-229 798.5 663 61.2
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 5.4e-229 798.1 684 60.8
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 7.0e-229 797.7 684 60.8
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 2.7e-228 795.8 684 60.7
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 2.7e-228 795.8 586 69.1
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 7.7e-228 794.3 686 60.8
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.0e-227 793.9 686 60.8
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.7e-227 793.1 687 60.7
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 2.2e-227 792.7 689 60.2
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.9e-227 792.3 675 60.3
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 6.5e-227 791.2 688 60.3
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 8.3e-222 774.2 1005 46.6
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 5.0e-219 765.0 690 59.1
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.5e-218 763.5 688 58.9
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.5e-218 763.5 688 58.9
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 3.3e-218 762.3 690 59.0
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.8e-217 759.2 678 60.5
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 9.8e-215 750.7 508 73.4
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 1.0e-211 740.7 714 56.7
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.7e-211 740.0 670 57.6
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 6.4e-206 721.5 452 77.2
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 3.3e-202 709.1 690 56.1
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.2e-201 707.2 660 54.8
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 2.2e-198 696.4 662 55.4
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 2.1e-193 679.9 692 51.2
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 2.6e-191 672.9 509 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 3.4e-191 672.5 670 52.8
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.1e-188 663.3 678 54.9
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.2e-185 654.1 674 52.7
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 7.9e-172 608.2 432 69.2
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.3e-161 574.3 430 64.2
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 9.6e-154 548.1 696 44.5
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 3.7e-153 546.2 532 55.1
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.8e-150 536.2 570 52.6
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.8e-144 517.3 553 54.1
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 2.3e-139 500.4 678 41.3
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 4.2e-133 479.6 688 40.3
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.8e-123 447.6 534 45.1
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 2.7e-116 423.7 434 53.0
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.5e-111 406.8 438 50.9
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.5e-103 380.2 411 55.0
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 8.6e-102 375.6 299 64.9
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-98 364.4 432 50.7
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 3.7e-89 333.6 372 52.4
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-87 328.2 302 57.9
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 3.3e-85 320.5 656 35.7
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.2e-81 307.8 218 69.7
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 7.1e-80 302.8 610 34.1
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 4.4e-66 256.9 256 55.9
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 5.8e-66 256.5 265 55.5
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.9e-65 253.4 262 53.1
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 3.2e-64 250.8 252 52.8
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 4.2e-64 250.4 262 55.7
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 5.1e-62 243.4 260 57.3
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 9.6e-61 239.2 260 56.5
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 1.3e-60 238.8 358 45.8
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-53 215.3 186 58.6
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 2.5e-53 214.5 141 74.5
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 4.3e-53 213.8 131 77.9
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 2.1e-47 194.9 234 53.0
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 2.8e-44 184.5 106 80.2
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 1.1e-43 182.6 206 54.9
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 1.5e-42 178.7 207 50.2
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 5.5e-40 170.2 119 68.1
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 5.1e-38 163.7 175 49.7
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 4.8e-36 157.1 102 72.5
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 8.2e-36 156.4 119 67.2
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.4e-35 155.6 102 71.6
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 9.0e-35 152.9 103 73.8
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.2e-33 148.3 89 76.4
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.2e-33 148.3 89 76.4
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.2e-33 148.3 89 76.4
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.5e-32 143.7 85 76.5
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 6.1e-31 140.2 120 59.2
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 6.1e-31 140.2 107 60.7
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 1.0e-30 139.4 165 50.3
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-30 137.5 225 36.9
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 5.1e-30 137.1 149 48.3
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-27 129.4 70 78.6
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 1.4e-27 129.0 79 73.4
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.4e-27 129.0 79 75.9
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 3.4e-26 124.4 106 58.5
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-25 122.9 72 72.2
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 4.8e-20 104.0 107 52.3
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 6.3e-20 103.6 186 40.9
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 8.2e-20 103.2 88 63.6
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-18 98.6 126 44.4
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 3.4e-18 97.8 138 42.0
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 5.9e-18 97.1 62 67.7
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-17 95.9 97 50.5
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 2.2e-17 95.1 56 71.4
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 6.5e-17 93.6 62 66.1
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 5.5e-16 90.5 48 85.4
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 5.5e-16 90.5 69 58.0
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 4.7e-15 87.4 56 64.3
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.0e-14 86.3 55 63.6
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 1.0e-14 86.3 56 62.5
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 3.0e-14 84.7 77 53.2
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 2.6e-13 81.6 57 71.9
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 7.4e-13 80.1 55 61.8
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-11 75.9 62 58.1
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 4.1e-11 74.3 46 69.6
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 5.9e-10 70.5 173 35.8
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 7.7e-10 70.1 50 66.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 7.7e-10 70.1 50 66.0
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 7.7e-10 70.1 77 46.8
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 2.2e-09 68.6 142 33.1
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 5.0e-09 67.4 39 74.4
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-08 65.5 101 38.6
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-07 62.4 157 36.3
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 6.1e-07 60.5 216 30.1
FvH4_1g30561 Fragaria vesca HOM05D033425 ORTHO05D197409 1.8e-06 58.9 71 46.5
FvH4_c4g00011 Fragaria vesca HOM05D033425 ORTHO05D196479 1.8e-06 58.9 71 46.5
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 2.3e-06 58.5 36 66.7
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 6.7e-06 57.0 93 36.6


User provided reference genes

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