Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 1.2e-225 786.2 384 100.0
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 2.4e-138 496.1 369 64.5
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 7.0e-130 468.0 368 62.2
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 2.5e-127 459.5 361 60.4
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.5e-127 458.4 361 61.2
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.5e-127 458.4 361 61.2
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.4e-125 453.8 361 60.7
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.1e-124 450.7 365 59.5
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.0e-124 449.9 361 59.8
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.4e-122 443.7 385 57.1
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 5.0e-120 435.3 377 57.6
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 1.9e-119 433.3 378 55.6
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.0e-117 427.6 365 55.3
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 4.4e-116 422.2 367 54.5
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 5.7e-116 421.8 369 53.4
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.7e-115 420.2 377 56.8
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 3.7e-115 419.1 371 58.2
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.4e-114 417.2 367 53.1
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 2.4e-114 416.4 366 54.4
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 7.0e-114 414.8 375 55.2
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 1.6e-113 413.7 370 55.1
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 5.9e-113 411.8 371 53.1
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 3.8e-112 409.1 373 54.2
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 5.0e-112 408.7 354 58.2
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.2e-110 404.1 369 54.5
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 3.6e-110 402.5 372 52.4
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 4.7e-110 402.1 368 54.6
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 8.8e-109 397.9 373 52.8
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 5.7e-108 395.2 361 54.8
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.3e-107 394.0 372 53.2
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 2.8e-107 392.9 376 51.9
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 4.9e-107 392.1 355 54.4
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.4e-106 390.6 367 52.9
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 1.2e-105 387.5 338 55.9
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.6e-105 387.1 367 49.6
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 3.5e-105 386.0 372 53.2
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.9e-105 385.2 369 51.8
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 5.9e-105 385.2 364 51.4
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.3e-104 383.3 374 51.9
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 8.6e-104 381.3 367 50.4
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 8.6e-104 381.3 371 49.9
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.5e-103 380.6 374 50.8
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.5e-103 379.8 371 52.0
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 5.6e-103 378.6 378 51.1
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 9.5e-103 377.9 385 49.6
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.6e-102 377.1 363 50.1
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 6.1e-102 375.2 369 51.5
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 8.0e-102 374.8 376 49.5
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.0e-101 374.4 375 49.3
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.4e-101 374.0 375 49.1
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.8e-101 373.6 371 51.2
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 4.0e-101 372.5 373 52.5
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 5.2e-101 372.1 395 51.1
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.2e-100 370.9 370 51.4
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 2.6e-100 369.8 377 50.7
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 5.7e-100 368.6 374 49.2
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.3e-99 367.5 375 49.6
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.3e-99 364.8 369 49.1
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 1.8e-98 363.6 392 50.5
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.6e-97 360.5 368 50.8
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.6e-97 360.5 368 50.8
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.6e-97 360.5 369 48.5
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.0e-97 360.1 374 50.5
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 2.0e-97 360.1 368 50.8
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 2.7e-97 359.8 370 47.0
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 3.0e-96 356.3 377 49.1
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 8.6e-96 354.8 370 51.6
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 8.6e-96 354.8 258 62.8
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 2.5e-95 353.2 371 48.0
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 5.6e-95 352.1 364 50.0
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 9.5e-95 351.3 360 48.3
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 3.6e-94 349.4 374 48.4
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 3.1e-93 346.3 375 47.7
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 3.1e-93 346.3 378 47.9
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.8e-93 345.1 306 55.6
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 8.9e-93 344.7 369 48.8
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.5e-92 344.0 371 45.6
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 3.4e-92 342.8 379 47.2
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 4.4e-92 342.4 377 46.9
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 5.8e-92 342.0 368 45.7
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 7.5e-92 341.7 374 48.7
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.2e-91 340.1 378 47.1
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 6.4e-91 338.6 369 48.5
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 8.3e-91 338.2 369 48.5
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.9e-90 337.0 377 43.8
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.9e-90 337.0 362 48.1
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-90 336.7 372 46.5
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 4.1e-90 335.9 367 44.7
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 1.2e-89 334.3 376 43.9
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 1.6e-89 334.0 374 50.5
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 2.0e-89 333.6 369 47.2
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 4.6e-89 332.4 372 45.4
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 4.6e-89 332.4 372 45.4
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 2.3e-88 330.1 359 46.8
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 3.0e-88 329.7 376 46.3
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 8.6e-88 328.2 266 57.9
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.5e-87 326.6 267 57.7
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.1e-85 321.2 377 48.5
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.4e-85 320.9 362 45.6
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 2.4e-82 310.1 368 48.4
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.2e-81 307.8 375 47.7
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 8.6e-80 301.6 370 45.1
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 1.8e-77 293.9 371 44.2
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 2.0e-76 290.4 361 42.9
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.6e-76 290.0 245 55.5
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 3.4e-76 289.7 374 43.9
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 4.4e-76 289.3 371 44.2
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 5.8e-76 288.9 373 45.8
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 7.6e-76 288.5 286 51.0
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 2.2e-75 287.0 396 41.9
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 2.2e-75 287.0 374 41.7
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 2.2e-75 287.0 363 43.3
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 3.8e-75 286.2 374 43.6
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 8.4e-75 285.0 373 43.4
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.1e-74 284.6 373 43.4
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.1e-74 284.6 267 51.3
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 2.4e-74 283.5 366 44.0
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.2e-74 283.1 311 43.4
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 4.1e-74 282.7 371 43.9
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.5e-73 279.6 228 60.5
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.5e-73 279.6 371 41.0
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 4.6e-73 279.3 370 43.5
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 7.8e-73 278.5 367 45.5
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 3.0e-72 276.6 371 44.2
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.6e-70 270.8 380 41.8
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 2.4e-69 266.9 252 56.0
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 5.2e-69 265.8 290 44.1
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 2.0e-68 263.8 362 41.2
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.5e-63 246.9 369 37.4
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 9.6e-55 218.4 235 46.0
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 1.8e-53 214.2 222 45.5
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 1.7e-51 207.6 182 54.4
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.5e-47 193.7 189 53.4
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.4e-37 161.4 205 41.5
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 1.2e-36 158.3 359 31.2
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 8.5e-35 152.1 186 39.8
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 1.6e-33 147.9 395 30.4
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 5.1e-32 142.9 393 30.5
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 8.2e-30 135.6 155 44.5
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 9.1e-29 132.1 370 29.2
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 8.5e-27 125.6 337 30.0
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 7.2e-26 122.5 346 27.7
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.8e-24 117.9 360 26.9
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 3.9e-24 116.7 343 28.3
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 4.4e-23 113.2 264 32.2
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.1e-21 108.6 114 48.2
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 1.8e-21 107.8 341 27.3
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 5.3e-21 106.3 217 32.3
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 9.1e-21 105.5 79 58.2
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 2.6e-20 104.0 128 38.3
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.5e-20 103.2 91 56.0
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.0e-19 102.1 346 26.0
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.0e-19 102.1 346 26.0
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.3e-19 101.7 345 27.0
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 6.5e-19 99.4 345 25.5
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 1.1e-18 98.6 348 24.7
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 3.2e-18 97.1 355 25.6
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 4.2e-18 96.7 352 25.6
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 4.2e-18 96.7 354 27.4
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 5.5e-18 96.3 347 22.5
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 1.2e-17 95.1 390 24.4
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 2.1e-17 94.4 341 24.9
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 2.1e-17 94.4 381 26.8
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 2.7e-17 94.0 340 25.6
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 7.9e-17 92.4 347 25.9
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.0e-16 92.0 326 25.5
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 3.9e-16 90.1 349 24.6
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 6.7e-16 89.4 91 47.3
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 1.3e-14 85.1 353 24.6
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 3.1e-13 80.5 358 24.0
unitig_8.g2925 Utricularia gibba HOM05D004907 ORTHO05D005707 7.2e-10 69.3 88 44.3
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 2.1e-09 67.8 99 37.4
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 6.1e-09 66.2 340 22.9
CiPaw.11G008800 Carya illinoinensis HOM05D004907 ORTHO05D005707 8.8e-08 62.4 101 40.6
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 2.0e-07 61.2 297 21.9
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 2.0e-07 61.2 92 39.1
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 5.7e-07 59.7 400 21.8
MBI06_g04298_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 9.7e-07 58.9 304 25.0
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 2.8e-06 57.4 382 22.3
Actinidia08148 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.7e-06 57.0 65 46.2
SMO304G0062 Selaginella moellendorffii HOM05D003005 ORTHO05D004170 8.2e-06 55.8 345 22.9


User provided reference genes

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