Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 3.8e-105 384.8 188 100.0
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.8e-94 349.4 188 88.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.0e-93 345.9 188 89.4
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 87.2
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 87.2
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 87.2
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 86.2
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 86.2
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 85.6
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 85.6
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 85.6
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.6
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.6
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 3.4e-90 335.1 180 88.9
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 85.1
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 84.6
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 86.2
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 84.0
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 84.0
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 84.6
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 84.0
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 84.0
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 84.6
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 84.6
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 83.5
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 85.1
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 85.1
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 84.6
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 83.5
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 85.1
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 84.0
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 82.4
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.6
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 83.0
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.9e-88 329.3 187 84.0
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 84.6
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 82.4
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 84.0
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 84.0
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 84.0
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 84.6
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 83.0
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 83.5
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 84.6
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 83.0
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 84.0
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 84.6
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 84.6
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 83.5
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 84.0
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 84.0
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 84.0
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 84.6
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 82.4
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 84.0
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 84.0
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 83.5
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 83.5
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 83.5
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 82.4
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.4
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 83.0
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 83.5
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 83.5
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 83.0
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 83.0
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.4
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 83.5
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 82.4
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 82.4
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 82.4
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 82.4
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 83.0
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 81.9
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.3e-86 322.4 186 82.3
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 83.0
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 83.0
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 81.4
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 80.9
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 81.4
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.2e-86 321.2 190 83.2
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.2e-86 321.2 190 83.2
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 5.2e-86 321.2 186 82.3
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 5.2e-86 321.2 186 82.3
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 80.9
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.5e-85 319.7 186 81.2
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.5e-85 319.7 186 81.2
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 81.4
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 81.9
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 81.4
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 79.8
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.3e-84 316.6 186 80.6
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 79.3
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.3e-84 316.6 189 81.5
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.7e-84 316.2 179 83.2
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.2e-84 315.8 189 82.5
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 79.3
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 77.7
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 80.3
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 79.3
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 78.7
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 81.5
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.6e-82 309.7 189 81.5
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 80.9
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 7.7e-82 307.4 189 79.9
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 2.2e-81 305.8 189 81.0
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 2.5e-80 302.4 188 76.6
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 76.6
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 79.8
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.4e-80 300.4 180 78.3
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 75.5
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 6.1e-79 297.7 188 75.5
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.8e-78 296.2 188 74.5
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 5.2e-78 294.7 190 76.3
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 75.8
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.5e-77 293.1 174 80.5
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.3e-77 292.0 188 75.0
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 5.7e-77 291.2 188 75.0
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 9.7e-77 290.4 188 75.0
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.3e-76 290.0 169 80.5
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 7.7e-74 280.8 188 75.5
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 7.2e-72 274.2 188 71.3
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 9.4e-72 273.9 188 69.7
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.1e-71 272.7 179 74.3
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 2.7e-71 272.3 179 74.3
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 8.0e-71 270.8 188 68.6
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 8.0e-71 270.8 188 73.4
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-70 270.4 177 76.3
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 6.8e-70 267.7 188 67.0
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.5e-69 266.5 188 69.1
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.5e-69 266.5 188 69.1
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 2.0e-69 266.2 187 68.4
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 9.8e-69 263.8 188 71.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 8.3e-68 260.8 189 67.2
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 3.5e-66 255.4 187 65.8
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 5.0e-65 251.5 187 65.2
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 4.0e-62 241.9 182 65.9
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.8e-59 233.0 178 63.5
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 5.9e-58 228.0 188 56.4
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 7.3e-56 221.1 165 70.3
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 8.3e-52 207.6 188 59.0
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.0e-49 200.7 187 53.5
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.1e-46 190.7 115 80.0
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 7.5e-45 184.5 121 71.9
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 3.5e-42 175.6 109 78.9
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 2.5e-40 169.5 123 72.4
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.3e-40 168.7 188 50.5
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 8.1e-39 164.5 85 92.9
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.3e-38 162.9 173 53.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 3.2e-35 152.5 127 59.8
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.4e-30 137.1 78 82.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.7e-26 122.9 92 68.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 8.6e-25 117.9 64 81.2
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.0e-09 67.8 35 88.6
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.4e-06 57.4 46 58.7
Peaxi162Scf00096g00093 Petunia axillaris HOM05D004362 ORTHO05D306384 9.0e-06 54.7 65 52.3


User provided reference genes

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