Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1831.2 883 100.0
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1352.0 882 73.6
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1324.7 839 75.9
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1322.0 881 70.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1321.2 880 71.5
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1319.3 881 71.1
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1315.8 881 70.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1315.8 881 71.4
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1315.1 915 69.9
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1312.7 881 71.2
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1307.7 855 72.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1307.0 883 69.9
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1304.3 882 70.2
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1300.0 884 69.7
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1290.0 880 70.2
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1280.4 883 69.2
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1278.5 884 69.6
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1270.4 883 67.7
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1269.2 882 67.8
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1269.2 880 69.4
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1268.4 1000 63.0
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1267.7 880 68.3
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1267.7 882 68.3
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1265.8 882 68.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1265.8 882 67.6
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1265.8 882 67.8
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1265.8 882 67.7
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1262.3 840 71.4
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1260.7 880 68.3
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1258.4 880 68.6
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1256.5 881 68.6
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1253.0 879 68.1
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1252.3 883 68.7
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1250.3 882 68.3
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1250.3 888 67.3
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1248.4 883 67.8
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 880 67.8
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1242.3 886 67.6
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1239.2 884 67.1
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1233.8 884 66.7
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1233.8 880 67.3
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1228.4 883 66.4
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1224.5 881 66.9
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1223.4 886 66.3
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1219.9 894 66.6
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1219.9 882 65.5
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1217.6 885 66.9
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1214.9 880 65.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1213.0 885 65.4
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1212.6 887 66.7
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1212.6 879 66.7
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1210.7 883 65.6
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1208.7 887 66.3
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1208.0 885 65.2
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1207.2 906 63.8
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1203.7 884 64.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1202.6 884 65.5
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1201.8 880 65.2
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1198.3 883 65.2
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1197.6 885 65.0
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1196.0 891 65.0
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1194.9 885 65.8
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1193.7 885 65.6
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1184.1 887 65.2
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1183.3 847 65.9
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1181.8 882 65.0
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 881 65.0
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 884 63.6
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1169.5 882 64.6
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1163.7 900 61.9
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 884 62.1
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1147.1 889 63.0
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1146.0 880 61.8
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1140.6 884 62.0
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1138.3 882 62.7
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 0.0e+00 1137.9 885 64.1
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1134.8 880 63.1
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1134.0 917 60.1
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1134.0 885 61.5
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1131.3 880 62.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 876 62.6
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1125.9 885 61.0
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1123.2 880 62.3
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 885 61.5
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 890 61.3
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1121.3 868 62.0
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1119.4 740 69.7
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1118.6 887 61.0
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 901 60.5
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1100.5 920 58.7
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1095.1 885 59.9
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 0.0e+00 1091.6 731 68.9
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1087.0 798 65.8
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 880 59.8
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 806 64.3
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 762 66.0
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.8e-311 1072.4 910 58.2
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.4e-305 1051.6 807 61.0
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 7.1e-303 1043.9 798 61.5
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.2e-302 1043.1 810 61.0
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.3e-301 1038.9 834 57.9
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 5.1e-301 1037.7 798 60.2
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 8.6e-301 1036.9 802 60.8
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.5e-300 1036.2 811 60.8
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.3e-300 1035.0 883 57.3
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-299 1033.1 887 58.2
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 2.4e-298 1028.9 811 60.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 3.4e-297 1025.0 800 60.4
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-295 1020.0 863 59.7
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.4e-295 1019.6 812 59.7
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 5.4e-295 1017.7 942 55.0
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-294 1016.5 843 58.4
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 3.5e-294 1015.0 874 56.1
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-290 1003.4 814 59.0
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.3e-283 979.9 813 58.4
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.4e-279 965.7 756 60.7
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 7.1e-271 937.6 817 55.7
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 4.8e-267 924.9 679 65.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.0e-248 864.0 889 49.3
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.2e-246 857.1 627 67.3
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.8e-245 853.2 798 53.3
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 7.4e-244 847.8 810 52.8
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 4.8e-235 818.5 676 62.6
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 4.5e-233 812.0 852 47.4
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 7.2e-231 804.7 853 46.9
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.7e-230 802.0 640 60.0
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.5e-228 797.0 819 49.5
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 4.9e-211 738.8 804 48.5
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.1e-210 737.6 471 71.5
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.9e-208 729.6 434 74.7
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 8.0e-198 694.9 724 48.3
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.0e-193 678.7 435 71.5
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 3.6e-182 642.9 426 70.0
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 5.2e-181 639.0 620 53.4
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 7.6e-180 635.2 679 50.2
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 9.6e-175 618.2 510 60.0
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 5.1e-168 595.9 566 53.2
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.7e-161 573.5 900 38.4
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 4.2e-154 549.7 586 50.9
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 6.9e-141 505.8 806 38.8
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 7.4e-135 485.7 320 69.7
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.0e-132 477.6 451 55.2
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.9e-131 473.8 271 79.7
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 4.4e-127 459.9 435 53.6
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.5e-123 445.7 365 60.0
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.5e-114 418.3 421 51.5
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.7e-107 394.8 410 51.5
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.8e-104 384.8 422 50.2
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.7e-99 368.2 246 69.9
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 6.6e-83 313.2 518 35.9
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.9e-77 295.0 843 28.6
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 3.4e-71 274.2 202 63.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.7e-70 271.9 226 60.2
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 6.6e-59 233.4 138 76.8
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.6e-55 219.9 166 59.6
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.5e-50 205.7 100 88.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.9e-45 188.7 193 52.3
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 4.2e-45 187.6 99 82.8
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 3.3e-34 151.4 211 40.8
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 3.8e-30 137.9 81 70.4
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 2.3e-27 128.6 86 69.8
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 2.2e-22 112.1 69 75.4
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.2e-22 112.1 143 47.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.5e-21 108.6 95 61.1
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.6e-20 105.9 84 54.8
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 3.6e-20 104.8 83 61.4
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.7e-17 95.9 46 91.3
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 6.3e-17 94.0 61 72.1
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.2e-14 85.5 97 47.4
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 3.2e-13 81.6 39 87.2
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 9.4e-13 80.1 97 48.5
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 9.4e-13 80.1 83 48.2
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.7e-12 77.8 97 39.2
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 6.1e-12 77.4 44 81.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 7.9e-12 77.0 96 39.6
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.9e-11 74.7 67 53.7


User provided reference genes

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