Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C764G10 Lonicera japonica HOM05D002984 ORTHO05D003561 4.6e-58 227.6 111 100.0
Nitab4.5_0000489g0030 Nicotiana tabacum HOM05D002984 ORTHO05D003561 2.7e-42 175.3 109 77.1
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 1.3e-41 172.9 109 77.1
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 6.6e-41 170.6 109 75.2
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 8.7e-41 170.2 109 75.2
vmacro10537 Vaccinium macrocarpon HOM05D002984 ORTHO05D003561 1.1e-40 169.9 109 74.3
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 1.5e-40 169.5 109 73.4
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 1.5e-40 169.5 109 73.4
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 5.6e-40 167.5 109 74.3
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 7.3e-40 167.2 107 73.8
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 7.3e-40 167.2 109 72.5
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 9.6e-40 166.8 109 72.5
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 9.6e-40 166.8 109 75.2
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 9.6e-40 166.8 109 73.4
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 1.3e-39 166.4 109 71.6
COL.COLO4_07881 Corchorus olitorius HOM05D002984 ORTHO05D003561 1.6e-39 166.0 109 73.4
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 1.6e-39 166.0 109 73.4
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 1.6e-39 166.0 109 74.3
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 3.6e-39 164.9 108 70.4
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 6.2e-39 164.1 109 72.5
Gohir.A13G053428 Gossypium hirsutum HOM05D002984 ORTHO05D003561 8.1e-39 163.7 109 71.6
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 8.1e-39 163.7 109 72.5
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 8.1e-39 163.7 109 72.5
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 8.1e-39 163.7 109 71.6
Lj2g0022832 Lotus japonicus HOM05D002984 ORTHO05D003561 8.1e-39 163.7 109 72.5
Dinv21122 Davidia involucrata HOM05D002984 ORTHO05D003561 1.1e-38 163.3 109 75.2
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 1.1e-38 163.3 109 72.5
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 1.4e-38 162.9 109 70.6
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 1.4e-38 162.9 109 71.6
Lj2g0024103 Lotus japonicus HOM05D002984 ORTHO05D003561 1.4e-38 162.9 109 72.5
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 2.4e-38 162.2 109 71.6
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 2.4e-38 162.2 109 71.6
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 3.1e-38 161.8 109 71.6
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 3.1e-38 161.8 109 71.6
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 4.0e-38 161.4 109 69.7
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 6.9e-38 160.6 109 70.6
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 6.9e-38 160.6 108 71.3
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 6.9e-38 160.6 109 68.8
Psat2g101040 Pisum sativum HOM05D002984 ORTHO05D003561 1.2e-37 159.8 108 69.4
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 1.5e-37 159.5 109 69.7
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 2.0e-37 159.1 109 68.8
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 2.0e-37 159.1 109 71.6
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 2.6e-37 158.7 109 67.9
FAN12G2547 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.6e-37 158.7 109 67.9
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 3.4e-37 158.3 109 68.8
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.4e-37 158.3 109 67.9
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 4.5e-37 157.9 109 71.6
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 4.5e-37 157.9 106 69.8
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 5.8e-37 157.5 109 67.9
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 5.8e-37 157.5 109 67.9
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 5.8e-37 157.5 106 69.8
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 7.6e-37 157.1 109 68.8
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 7.6e-37 157.1 109 69.7
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 9.9e-37 156.8 109 67.0
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 2.2e-36 155.6 109 68.8
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 2.9e-36 155.2 109 65.1
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 3.8e-36 154.8 109 67.9
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 3.8e-36 154.8 109 66.1
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 4.9e-36 154.5 109 69.7
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 1.9e-35 152.5 122 62.3
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 1.9e-35 152.5 109 65.1
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 1.9e-35 152.5 109 65.1
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 2.4e-35 152.1 109 66.1
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 2.4e-35 152.1 109 67.0
SGA_v2.0_scaffold14G06838 Striga asiatica HOM05D002984 ORTHO05D003561 2.4e-35 152.1 109 68.8
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 2.4e-35 152.1 109 69.7
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 4.2e-35 151.4 109 68.8
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 4.2e-35 151.4 109 66.1
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 5.4e-35 151.0 100 70.0
Nitab4.5_0005194g0020 Nicotiana tabacum HOM05D002984 ORTHO05D003561 7.1e-35 150.6 106 67.9
Oeu041887.1 Olea europaea HOM05D002984 ORTHO05D003561 1.2e-34 149.8 109 68.8
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 1.2e-34 149.8 109 67.0
CSS0018296 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 1.6e-34 149.4 100 70.0
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 2.1e-34 149.1 112 63.4
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 2.1e-34 149.1 107 68.2
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 2.1e-34 149.1 107 68.2
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 2.7e-34 148.7 107 68.2
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 2.7e-34 148.7 107 67.3
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 3.5e-34 148.3 107 67.3
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 3.5e-34 148.3 106 67.0
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 6.0e-34 147.5 112 61.6
Sc25g0002400 Simmondsia chinensis HOM05D002984 ORTHO05D003561 7.9e-34 147.1 113 61.1
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 1.0e-33 146.7 114 63.2
Glyma.02G098500 Glycine max HOM05D002984 ORTHO05D003561 1.0e-33 146.7 109 64.2
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 1.3e-33 146.4 107 67.3
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 1.3e-33 146.4 107 67.3
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 1.3e-33 146.4 108 63.9
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 2.3e-33 145.6 107 65.4
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 2.3e-33 145.6 107 65.4
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 2.3e-33 145.6 107 66.4
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 3.9e-33 144.8 106 64.2
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 5.1e-33 144.4 106 63.2
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 5.1e-33 144.4 107 65.4
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 8.7e-33 143.7 107 65.4
Glyma.01G086600 Glycine max HOM05D002984 ORTHO05D003561 8.7e-33 143.7 109 64.2
MBI01_g32855_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.1e-32 143.3 118 63.6
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 2.5e-32 142.1 132 55.3
FvH4_5g05460 Fragaria vesca HOM05D002984 ORTHO05D003561 3.3e-32 141.7 111 63.1
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 5.6e-32 141.0 164 49.4
BraA08t34651Z Brassica rapa HOM05D002984 ORTHO05D003561 1.3e-31 139.8 108 64.8
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 1.6e-31 139.4 107 58.9
FAN13G2905 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.6e-31 139.4 109 64.2
SHI14503 Sapria himalayana HOM05D002984 ORTHO05D003561 1.6e-31 139.4 109 62.4
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 3.7e-31 138.3 108 61.1
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 3.7e-31 138.3 110 62.7
BolC3t19582H Brassica oleracea HOM05D002984 ORTHO05D003561 4.8e-31 137.9 121 57.9
Lsat_1_v5_gn_3_60001 Lactuca sativa HOM05D002984 ORTHO05D003561 4.8e-31 137.9 106 63.2
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 3.1e-30 135.2 110 59.1
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 3.1e-30 135.2 108 58.3
FvH4_6g01630 Fragaria vesca HOM05D002984 ORTHO05D003561 4.0e-30 134.8 110 63.6
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 6.9e-30 134.0 183 43.7
HanXRQChr17g0552241 Helianthus annuus HOM05D002984 ORTHO05D003561 9.0e-30 133.7 106 60.4
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 3.4e-29 131.7 108 58.3
Pp3c25_2660 Physcomitrium patens HOM05D002984 ORTHO05D003561 4.5e-29 131.3 109 56.9
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 6.4e-28 127.5 84 73.8
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 4.2e-27 124.8 109 53.2
Nitab4.5_0000672g0110 Nicotiana tabacum HOM05D002984 ORTHO05D003561 1.2e-26 123.2 111 59.5
Dinv40427 Davidia involucrata HOM05D002984 ORTHO05D003561 3.5e-26 121.7 109 52.3
Peaxi162Scf00004g01519 Petunia axillaris HOM05D002984 ORTHO05D003561 6.0e-26 120.9 75 77.3
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 1.0e-25 120.2 77 75.3
FAN03G1604 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.0e-25 118.6 109 58.7
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 1.5e-24 116.3 75 76.0
SEGI_39328 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 7.4e-24 114.0 104 52.9
Mapoly0022s0114 Marchantia polymorpha HOM05D002984 ORTHO05D003561 1.6e-23 112.8 107 52.3
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 3.7e-23 111.7 104 51.9
FvH4_5g12610 Fragaria vesca HOM05D002984 ORTHO05D003561 2.4e-22 109.0 110 50.0
FAN04G1620 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.4e-22 109.0 110 50.0
FAN18G0496 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.4e-22 109.0 110 50.0
FAN18G2176 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.4e-22 109.0 110 50.0
Lj6C762G14 Lonicera japonica HOM05D002984 ORTHO05D003561 4.0e-22 108.2 111 58.6
QL10p023599 Quercus lobata HOM05D002984 ORTHO05D003561 6.9e-22 107.5 106 52.8
FAN10G3298 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.0e-20 103.6 109 52.3
FAN18G2442 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.7e-20 102.8 111 50.5
FAN18G3612 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.7e-20 102.8 111 50.5
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 2.9e-20 102.1 107 46.7
Solyc05g009710.4 Solanum lycopersicum HOM05D002984 ORTHO05D003561 3.8e-20 101.7 116 50.9
AUR62002298 Chenopodium quinoa HOM05D002984 ORTHO05D003561 2.5e-19 99.0 81 59.3
Actinidia39817 Actinidia chinensis HOM05D002984 ORTHO05D003561 1.2e-18 96.7 109 41.3
Lj9A429G49 Lonicera japonica HOM05D002984 ORTHO05D003561 2.7e-18 95.5 112 42.9
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 4.6e-18 94.7 113 44.2
ECA246G1507 Erigeron canadensis HOM05D002984 ORTHO05D003561 1.1e-16 90.1 94 47.9
SMO340G0161 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 2.5e-16 89.0 104 46.2
SalBow8G0674 Salvia bowleyana HOM05D002984 ORTHO05D003561 2.2e-15 85.9 127 44.1
BcaC05g26654 Brassica carinata HOM05D002984 ORTHO05D003561 3.7e-15 85.1 59 64.4
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 2.0e-13 79.3 46 78.3
SMO356G0715 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 2.0e-13 79.3 107 41.1
Sabra02G0035000 Salix brachista HOM05D002984 ORTHO05D003561 7.6e-13 77.4 42 83.3
PGSC0003DMG401000817 Solanum tuberosum HOM05D002984 ORTHO05D003561 1.1e-11 73.6 42 73.8
FAN13G1615 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.9e-11 72.8 110 43.6
Lalb_Chr11g0074771 Lupinus albus HOM05D002984 ORTHO05D003561 4.2e-11 71.6 115 33.0
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 4.6e-10 68.2 108 35.2
Cpa.g.sc13.36 Carica papaya HOM05D002984 ORTHO05D003561 1.0e-09 67.0 70 44.3
Medtr6g085080 Medicago truncatula HOM05D002984 ORTHO05D022868 5.1e-09 64.7 106 34.9
TPR.G31455 Trifolium pratense HOM05D002984 ORTHO05D022868 5.1e-09 64.7 106 33.0
ECA246G2084 Erigeron canadensis HOM05D002984 ORTHO05D003561 6.7e-09 64.3 62 56.5
Medtr6g085100 Medicago truncatula HOM05D002984 ORTHO05D022868 6.7e-09 64.3 106 34.9
FAN08G0776 Fragaria x ananassa HOM05D002984 ORTHO05D003561 8.8e-09 63.9 68 50.0
Glyma.20G031800 Glycine max HOM05D002984 ORTHO05D014229 8.8e-09 63.9 108 32.4
Psat1g039440 Pisum sativum HOM05D002984 ORTHO05D022868 8.8e-09 63.9 106 31.1
VMungo0251G1889 Vigna mungo HOM05D002984 ORTHO05D003561 1.5e-08 63.2 107 34.6
Lalb_Chr14g0371321 Lupinus albus HOM05D002984 ORTHO05D003561 1.9e-08 62.8 104 30.8
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 3.3e-08 62.0 45 64.4
Lj2g0016414 Lotus japonicus HOM05D002984 ORTHO05D022868 4.3e-08 61.6 107 32.7
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 7.4e-08 60.8 31 90.3
VMungo0464G0094 Vigna mungo HOM05D002984 ORTHO05D014229 2.8e-07 58.9 107 29.0
FAN04G0139 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.4e-06 56.6 43 58.1
Peaxi162Scf00004g01513 Petunia axillaris HOM05D002984 ORTHO05D003561 2.4e-06 55.8 33 69.7
arahy.Tifrunner.gnm1.ann1.48S2GI Arachis hypogaea HOM05D002984 ORTHO05D003561 4.1e-06 55.1 109 26.6
arahy.Tifrunner.gnm1.ann1.53ZNG0 Arachis hypogaea HOM05D002984 ORTHO05D003561 4.1e-06 55.1 109 26.6


User provided reference genes

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