Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C762G14 Lonicera japonica HOM05D002984 ORTHO05D003561 7.5e-86 320.5 160 100.0
Lj6C764G10 Lonicera japonica HOM05D002984 ORTHO05D003561 9.9e-22 107.5 111 58.6
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 3.1e-15 85.9 106 44.3
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 3.1e-15 85.9 106 44.3
Lj2g0022832 Lotus japonicus HOM05D002984 ORTHO05D003561 6.9e-15 84.7 108 47.2
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 9.0e-15 84.3 108 46.3
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 1.5e-14 83.6 108 44.4
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 1.5e-14 83.6 108 44.4
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 2.6e-14 82.8 108 46.3
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 2.6e-14 82.8 108 46.3
vmacro10537 Vaccinium macrocarpon HOM05D002984 ORTHO05D003561 2.6e-14 82.8 108 44.4
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 3.4e-14 82.4 108 44.4
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 3.4e-14 82.4 108 45.4
Nitab4.5_0000489g0030 Nicotiana tabacum HOM05D002984 ORTHO05D003561 5.8e-14 81.6 108 43.5
Lj2g0024103 Lotus japonicus HOM05D002984 ORTHO05D003561 7.6e-14 81.3 108 45.4
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 1.3e-13 80.5 108 44.4
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 2.2e-13 79.7 108 42.6
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 2.2e-13 79.7 108 43.5
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 2.2e-13 79.7 108 43.5
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 2.2e-13 79.7 108 42.6
COL.COLO4_07881 Corchorus olitorius HOM05D002984 ORTHO05D003561 2.9e-13 79.3 108 43.5
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 2.9e-13 79.3 108 43.5
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 2.9e-13 79.3 108 43.5
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 2.9e-13 79.3 108 43.5
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 2.9e-13 79.3 108 43.5
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 3.8e-13 79.0 108 44.4
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 3.8e-13 79.0 107 43.0
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 4.9e-13 78.6 108 43.5
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 4.9e-13 78.6 108 43.5
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 4.9e-13 78.6 108 43.5
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 4.9e-13 78.6 108 42.6
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 6.5e-13 78.2 108 41.7
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 6.5e-13 78.2 108 43.5
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 6.5e-13 78.2 108 43.5
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 8.4e-13 77.8 110 43.6
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 1.4e-12 77.0 108 42.6
Gohir.A13G053428 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.4e-12 77.0 108 41.7
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.4e-12 77.0 108 41.7
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 1.4e-12 77.0 108 41.7
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 1.4e-12 77.0 107 42.1
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 1.9e-12 76.6 108 42.6
Psat2g101040 Pisum sativum HOM05D002984 ORTHO05D003561 1.9e-12 76.6 107 41.1
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 1.9e-12 76.6 87 43.7
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 2.5e-12 76.3 108 40.7
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 2.5e-12 76.3 110 42.7
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 2.5e-12 76.3 104 43.3
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 3.2e-12 75.9 108 40.7
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 3.2e-12 75.9 108 40.7
Glyma.01G086600 Glycine max HOM05D002984 ORTHO05D003561 4.2e-12 75.5 107 43.0
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 4.2e-12 75.5 108 42.6
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 5.5e-12 75.1 108 40.7
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 7.1e-12 74.7 107 43.0
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 1.2e-11 73.9 108 40.7
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 1.6e-11 73.6 105 43.8
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.6e-11 73.6 105 43.8
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 1.6e-11 73.6 108 40.7
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 1.6e-11 73.6 106 39.6
Glyma.02G098500 Glycine max HOM05D002984 ORTHO05D003561 1.6e-11 73.6 107 41.1
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 1.6e-11 73.6 110 39.1
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 1.6e-11 73.6 105 41.0
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 2.1e-11 73.2 107 40.2
FAN18G2442 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.1e-11 73.2 88 44.3
FAN18G3612 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.1e-11 73.2 88 44.3
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 2.7e-11 72.8 105 41.9
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 2.7e-11 72.8 105 41.9
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 2.7e-11 72.8 80 46.2
Nitab4.5_0005194g0020 Nicotiana tabacum HOM05D002984 ORTHO05D003561 3.5e-11 72.4 105 41.0
Dinv21122 Davidia involucrata HOM05D002984 ORTHO05D003561 4.6e-11 72.0 108 41.7
Nitab4.5_0000672g0110 Nicotiana tabacum HOM05D002984 ORTHO05D003561 4.6e-11 72.0 100 44.0
SGA_v2.0_scaffold14G06838 Striga asiatica HOM05D002984 ORTHO05D003561 6.1e-11 71.6 108 41.7
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 7.9e-11 71.2 112 37.5
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 7.9e-11 71.2 105 42.9
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 7.9e-11 71.2 105 41.0
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 7.9e-11 71.2 103 37.9
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 7.9e-11 71.2 108 38.0
FAN12G2547 Fragaria x ananassa HOM05D002984 ORTHO05D003561 7.9e-11 71.2 108 38.0
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 7.9e-11 71.2 108 38.0
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 7.9e-11 71.2 108 38.0
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.0e-10 70.9 108 38.0
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 1.0e-10 70.9 108 38.9
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 1.3e-10 70.5 105 41.0
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 1.3e-10 70.5 101 41.6
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 1.3e-10 70.5 108 37.0
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 1.3e-10 70.5 108 37.0
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 1.8e-10 70.1 108 38.9
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 1.8e-10 70.1 114 38.6
MBI01_g32855_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.8e-10 70.1 117 37.6
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 2.3e-10 69.7 105 40.0
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 2.3e-10 69.7 105 40.0
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 2.3e-10 69.7 107 39.3
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 3.0e-10 69.3 105 42.9
FAN03G1604 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.0e-10 69.3 99 43.4
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 3.0e-10 69.3 108 38.9
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 3.0e-10 69.3 108 38.9
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 3.9e-10 68.9 105 41.9
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 3.9e-10 68.9 105 41.9
SalBow8G0674 Salvia bowleyana HOM05D002984 ORTHO05D003561 3.9e-10 68.9 120 37.5
Sc25g0002400 Simmondsia chinensis HOM05D002984 ORTHO05D003561 5.1e-10 68.6 113 37.2
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 6.7e-10 68.2 105 41.9
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 6.7e-10 68.2 105 41.9
FAN10G3298 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.5e-09 67.0 96 43.8
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 1.9e-09 66.6 103 37.9
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 2.5e-09 66.2 107 41.1
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 3.3e-09 65.9 121 36.4
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 3.3e-09 65.9 103 40.8
Lsat_1_v5_gn_3_60001 Lactuca sativa HOM05D002984 ORTHO05D003561 3.3e-09 65.9 103 41.7
SHI14503 Sapria himalayana HOM05D002984 ORTHO05D003561 3.3e-09 65.9 107 38.3
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 4.3e-09 65.5 112 35.7
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 4.3e-09 65.5 107 40.2
CSS0018296 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 5.7e-09 65.1 99 38.4
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 5.7e-09 65.1 99 38.4
Oeu041887.1 Olea europaea HOM05D002984 ORTHO05D003561 7.4e-09 64.7 108 39.8
BolC3t19582H Brassica oleracea HOM05D002984 ORTHO05D003561 9.7e-09 64.3 121 35.5
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 9.7e-09 64.3 107 36.4
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 9.7e-09 64.3 131 32.1
FvH4_6g01630 Fragaria vesca HOM05D002984 ORTHO05D003561 1.3e-08 63.9 108 37.0
BraA08t34651Z Brassica rapa HOM05D002984 ORTHO05D003561 1.6e-08 63.5 106 41.5
FvH4_5g05460 Fragaria vesca HOM05D002984 ORTHO05D003561 1.6e-08 63.5 109 37.6
FAN13G2905 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.2e-08 63.2 106 36.8
HanXRQChr17g0552241 Helianthus annuus HOM05D002984 ORTHO05D003561 2.8e-08 62.8 103 37.9
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 2.8e-08 62.8 39 69.2
Pp3c25_2660 Physcomitrium patens HOM05D002984 ORTHO05D003561 4.8e-08 62.0 107 34.6
QL10p023599 Quercus lobata HOM05D002984 ORTHO05D003561 2.4e-07 59.7 114 34.2
Dinv40427 Davidia involucrata HOM05D002984 ORTHO05D003561 3.1e-07 59.3 108 36.1
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 4.1e-07 58.9 107 35.5
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 4.1e-07 58.9 33 75.8
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 6.9e-07 58.2 46 60.9
Mapoly0022s0114 Marchantia polymorpha HOM05D002984 ORTHO05D003561 3.4e-06 55.8 107 34.6
Peaxi162Scf00004g01513 Petunia axillaris HOM05D002984 ORTHO05D003561 3.4e-06 55.8 33 69.7
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 5.9e-06 55.1 114 32.5
FvH4_5g12610 Fragaria vesca HOM05D002984 ORTHO05D003561 7.7e-06 54.7 110 34.5
FAN04G1620 Fragaria x ananassa HOM05D002984 ORTHO05D003561 7.7e-06 54.7 110 34.5
FAN18G0496 Fragaria x ananassa HOM05D002984 ORTHO05D003561 7.7e-06 54.7 110 34.5
FAN18G2176 Fragaria x ananassa HOM05D002984 ORTHO05D003561 7.7e-06 54.7 110 34.5


User provided reference genes

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