Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 0.0e+00 2732.2 1365 100.0
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1633.2 1532 60.4
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 0.0e+00 1630.5 1556 59.3
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 0.0e+00 1629.0 1519 59.3
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 0.0e+00 1628.2 1531 59.8
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 0.0e+00 1627.5 1543 59.6
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1626.3 1532 60.1
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 0.0e+00 1622.8 1531 59.4
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1621.3 1531 59.4
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 0.0e+00 1620.9 1541 59.6
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 0.0e+00 1615.5 1530 58.6
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 0.0e+00 1615.1 1519 59.4
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1614.7 1514 59.8
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 0.0e+00 1613.6 1531 59.0
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 0.0e+00 1612.0 1530 59.2
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 0.0e+00 1610.5 1529 59.1
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 0.0e+00 1608.2 1530 59.1
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 0.0e+00 1607.0 1531 58.7
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1604.0 1515 59.3
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 0.0e+00 1602.0 1531 58.5
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 0.0e+00 1601.6 1527 58.3
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 0.0e+00 1596.6 1531 58.3
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 0.0e+00 1593.6 1531 58.1
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 0.0e+00 1592.0 1532 58.6
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 0.0e+00 1587.8 1530 58.0
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1586.2 1530 58.2
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1584.3 1531 58.5
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 0.0e+00 1583.2 1534 58.2
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 0.0e+00 1582.8 1533 57.7
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 0.0e+00 1581.6 1528 58.2
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 0.0e+00 1581.2 1529 57.9
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1580.8 1529 57.9
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1580.5 1529 57.8
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 0.0e+00 1580.5 1527 57.8
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 0.0e+00 1577.4 1572 57.3
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 0.0e+00 1577.4 1530 58.3
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 0.0e+00 1575.5 1523 58.3
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1575.5 1529 57.9
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1575.1 1531 57.9
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 0.0e+00 1572.8 1524 58.5
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 0.0e+00 1571.2 1531 57.7
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 0.0e+00 1570.8 1529 57.9
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 0.0e+00 1568.9 1534 57.8
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 0.0e+00 1566.6 1506 58.5
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 0.0e+00 1565.8 1525 57.3
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 0.0e+00 1564.3 1534 57.6
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1562.7 1557 57.0
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1561.6 1557 56.9
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1557.7 1571 56.5
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1557.0 1534 56.5
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 0.0e+00 1556.6 1533 57.1
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 0.0e+00 1556.2 1529 57.3
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 0.0e+00 1555.0 1531 57.0
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 0.0e+00 1554.3 1654 54.5
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 0.0e+00 1553.9 1532 57.2
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1551.6 1526 57.1
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 0.0e+00 1550.8 1528 57.1
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 0.0e+00 1549.3 1530 57.5
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1539.2 1532 56.3
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1536.9 1528 56.9
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1536.5 1534 56.6
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1531.9 1528 56.0
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 0.0e+00 1527.7 1532 55.9
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 0.0e+00 1525.8 1528 56.1
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1525.8 1530 55.9
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1521.9 1527 56.1
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1521.1 1527 56.1
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 0.0e+00 1521.1 1528 55.8
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 0.0e+00 1520.4 1531 56.0
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 0.0e+00 1519.2 1527 56.0
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 0.0e+00 1519.2 1527 56.0
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 0.0e+00 1518.8 1530 55.8
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 0.0e+00 1518.8 1530 56.0
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1518.8 1527 55.9
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1516.9 1527 55.9
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 0.0e+00 1516.9 1516 56.3
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 0.0e+00 1511.5 1530 55.6
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 0.0e+00 1508.0 1528 55.1
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1503.0 1531 55.6
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 0.0e+00 1500.7 1481 57.8
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1492.2 1575 54.4
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 0.0e+00 1491.1 1583 55.1
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 0.0e+00 1482.6 1620 53.5
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 0.0e+00 1480.3 1529 54.4
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1472.2 1522 54.3
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 0.0e+00 1437.6 1534 54.3
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1433.7 1527 53.6
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 0.0e+00 1429.8 1626 51.8
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1396.3 1522 52.8
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 0.0e+00 1322.4 1515 49.0
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 0.0e+00 1320.1 1460 52.2
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 0.0e+00 1290.0 1529 50.4
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 0.0e+00 1285.4 2294 38.8
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 0.0e+00 1224.9 1450 49.7
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1199.1 1549 45.8
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1198.3 1549 45.4
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1196.4 1545 45.8
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1196.4 1541 46.3
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1185.2 1531 45.8
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1177.5 1539 45.1
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 0.0e+00 1116.7 1123 57.1
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 0.0e+00 1102.8 1014 61.0
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 9.3e-312 1073.5 928 63.3
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 3.2e-310 1068.9 1121 54.7
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 5.4e-310 1068.1 1306 48.8
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 3.9e-308 1062.0 930 63.7
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 1.6e-306 1056.6 919 62.9
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 1.1e-297 1027.3 986 58.3
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.3e-283 978.8 1074 52.7
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 6.4e-279 964.9 1028 54.7
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 1.8e-273 946.8 1460 40.3
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.2e-271 939.9 1019 53.7
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 9.2e-209 731.9 828 52.3
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.2e-205 721.5 817 52.6
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 3.4e-195 686.8 576 63.7
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.4e-193 681.4 702 55.1
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 1.3e-175 621.7 469 68.4
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 7.4e-158 562.8 554 56.7
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 6.5e-146 523.1 566 53.5
Gohir.D12G176866 Gossypium hirsutum HOM05D003504 ORTHO05D004006 3.6e-144 517.3 387 70.3
QL04p085812 Quercus lobata HOM05D003504 ORTHO05D004006 8.2e-125 453.0 471 55.2
Phvul.009G114325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.4e-124 451.4 430 58.1
RcHm_v2.0_Chr5g0024371 Rosa chinensis HOM05D003504 ORTHO05D004006 1.2e-120 439.1 344 65.1
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 2.1e-112 411.8 450 54.2
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 8.0e-112 409.8 409 55.7
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 3.0e-103 381.3 351 57.5
Os03g0328000 Oryza sativa ssp. japonica HOM05D003504 ORTHO05D004006 3.0e-103 381.3 281 70.8
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 4.0e-103 380.9 308 63.0
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 3.9e-98 364.4 554 44.0
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 3.0e-90 338.2 284 63.0
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 2.3e-87 328.6 306 55.6
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 2.6e-70 271.9 227 63.9
AL727U10010 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.7e-69 269.2 204 70.6
Prupe.3G108400 Prunus persica HOM05D003504 ORTHO05D004006 8.4e-69 266.9 332 50.3
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.1e-65 256.5 228 60.1
CSS0012196 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 2.7e-59 235.3 207 60.9
Cc03_g11030 Coffea canephora HOM05D003504 ORTHO05D004006 1.1e-57 229.9 209 57.9
Ca_24185_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 6.4e-53 214.2 137 74.5
Solyc08g016060.1 Solanum lycopersicum HOM05D003504 ORTHO05D004006 1.1e-52 213.4 263 49.4
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 6.0e-51 207.6 186 56.5
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 1.1e-41 176.8 125 65.6
RcHm_v2.0_Chr5g0024381 Rosa chinensis HOM05D003504 ORTHO05D004006 2.5e-33 149.1 126 65.9
AagrBONN_evm.TU.Sc2ySwM_362.1411 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.5e-30 139.8 296 31.1
vmacro15991 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 2.7e-27 129.0 320 31.9
AagrBONN_evm.TU.Sc2ySwM_344.764 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.4e-26 126.7 116 56.0
Gohir.A12G174201 Gossypium hirsutum HOM05D003504 ORTHO05D004006 3.9e-26 125.2 162 49.4
Cpa.g.sc34.43 Carica papaya HOM05D003504 ORTHO05D004006 5.1e-26 124.8 136 53.7
Potri.004G000750 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.3e-24 120.2 99 67.7
Peaxi162Scf00280g00008 Petunia axillaris HOM05D003504 ORTHO05D004006 2.8e-24 119.0 206 39.8
CAN.G338.64 Capsicum annuum HOM05D003504 ORTHO05D004006 3.4e-22 112.1 150 44.7
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 2.3e-18 99.4 130 47.7
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 3.0e-18 99.0 88 55.7
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 1.7e-16 93.2 89 55.1
CDE09G0213 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 9.4e-12 77.4 48 70.8
QL04p085078 Quercus lobata HOM05D003504 ORTHO05D004006 1.6e-11 76.6 44 75.0
CAN.G861.1 Capsicum annuum HOM05D003504 ORTHO05D004006 3.6e-11 75.5 78 51.3
Lsat_1_v5_gn_3_41440 Lactuca sativa HOM05D003504 ORTHO05D004006 1.8e-10 73.2 95 48.4
Phvul.011G177325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.3e-10 72.8 96 51.0
unitig_0.g2295 Utricularia gibba HOM05D003504 ORTHO05D004006 4.0e-10 72.0 61 62.3
Phvul.011G172400 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 9.7e-09 67.4 56 58.9
CAN.G83.10 Capsicum annuum HOM05D003504 ORTHO05D004006 1.4e-07 63.5 117 37.6
CAN.G83.9 Capsicum annuum HOM05D003504 ORTHO05D004006 2.4e-07 62.8 42 66.7
MCO09G216 Micromonas commoda HOM05D003504 ORTHO05D004006 4.1e-07 62.0 223 26.9
Psat6g175760 Pisum sativum HOM05D001676 ORTHO05D001539 4.1e-07 62.0 41 73.2
QL04p084884 Quercus lobata HOM05D003504 ORTHO05D004006 3.5e-06 58.9 86 44.2


User provided reference genes

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