Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 7.0e-136 487.3 241 100.0
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 3.6e-116 421.8 240 83.8
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 4.0e-115 418.3 234 86.8
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 5.2e-115 417.9 234 86.3
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 4.4e-114 414.8 242 82.6
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 1.4e-112 409.8 238 81.1
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 1.8e-112 409.5 241 80.9
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 1.6e-111 406.4 241 79.7
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 2.0e-111 406.0 241 80.1
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 5.9e-111 404.4 237 80.6
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 1.3e-110 403.3 236 81.4
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 2.3e-110 402.5 234 81.2
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 2.9e-110 402.1 234 82.1
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 3.8e-110 401.7 237 80.2
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.1e-109 400.2 230 82.6
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 1.9e-109 399.4 241 78.8
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 2.5e-109 399.1 230 82.2
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 2.5e-109 399.1 241 78.4
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 2.5e-109 399.1 241 80.5
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 3.3e-109 398.7 235 80.0
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 5.6e-109 397.9 236 79.2
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 9.5e-109 397.1 230 80.9
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 9.5e-109 397.1 230 80.9
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 1.6e-108 396.4 230 80.9
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 2.8e-108 395.6 241 77.6
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 4.7e-108 394.8 230 82.2
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 6.1e-108 394.4 241 77.2
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 8.0e-108 394.0 230 80.9
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 1.0e-107 393.7 236 80.5
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 1.0e-107 393.7 240 78.3
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 1.4e-107 393.3 236 78.8
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 2.3e-107 392.5 241 78.4
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 3.0e-107 392.1 235 78.3
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 1.2e-106 390.2 241 78.4
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 2.0e-106 389.4 253 74.7
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 4.4e-106 388.3 221 82.8
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 4.4e-106 388.3 241 78.0
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 5.7e-106 387.9 236 78.0
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 7.5e-106 387.5 230 80.9
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 1.7e-105 386.3 241 76.8
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 2.2e-105 386.0 266 71.1
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 2.9e-105 385.6 241 74.7
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 3.7e-105 385.2 241 75.9
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 4.9e-105 384.8 254 75.2
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 6.4e-105 384.4 241 75.5
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.4e-104 383.3 230 79.1
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 3.2e-104 382.1 241 73.4
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 1.2e-103 380.2 232 75.9
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 1.6e-103 379.8 241 74.3
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 2.0e-103 379.4 241 73.4
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 2.0e-103 379.4 223 78.5
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 3.5e-103 378.6 241 73.9
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 4.6e-103 378.3 241 73.4
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 7.8e-103 377.5 235 74.0
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 1.0e-102 377.1 241 73.4
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 1.3e-102 376.7 242 76.9
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 1.7e-102 376.3 237 75.9
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.7e-102 376.3 264 71.6
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 2.3e-102 375.9 235 73.6
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 5.0e-102 374.8 241 72.6
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 5.0e-102 374.8 241 72.6
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.1e-101 373.6 241 72.6
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 1.5e-101 373.2 237 75.9
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 4.3e-101 371.7 241 71.8
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 4.3e-101 371.7 240 72.9
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 9.5e-101 370.5 241 71.4
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 9.5e-101 370.5 241 71.4
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 1.2e-100 370.2 232 73.3
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.2e-100 370.2 241 73.9
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 2.1e-100 369.4 241 73.4
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 3.6e-100 368.6 229 73.8
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 4.7e-100 368.2 236 72.5
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 6.2e-100 367.9 236 72.5
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.1e-99 365.5 231 78.8
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 2.9e-97 359.0 242 69.4
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 4.9e-97 358.2 230 75.2
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 6.4e-97 357.8 237 70.0
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 5.4e-96 354.8 282 62.8
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 2.0e-95 352.8 240 67.5
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 2.7e-95 352.4 209 80.4
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 1.0e-94 350.5 228 72.8
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 1.3e-94 350.1 228 71.9
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.0e-94 349.0 228 72.4
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.5e-93 345.9 260 64.6
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 2.5e-93 345.9 242 70.7
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.8e-91 339.7 237 68.4
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 6.8e-91 337.8 250 66.4
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 1.3e-89 333.6 210 75.7
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.2e-89 332.8 259 63.7
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 7.8e-87 324.3 196 78.6
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 1.1e-85 320.5 243 70.4
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 2.3e-83 312.8 215 67.9
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 5.2e-83 311.6 226 64.2
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 9.9e-82 307.4 232 65.1
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 9.9e-82 307.4 268 61.2
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 4.1e-80 302.0 211 68.7
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 4.1e-80 302.0 196 75.5
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.2e-79 300.4 191 74.9
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 3.3e-77 292.4 295 53.9
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 6.8e-75 284.6 238 57.1
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 1.3e-73 280.4 162 80.2
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 4.6e-71 271.9 194 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 1.5e-66 256.9 225 55.1
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 5.8e-66 255.0 220 54.1
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 5.4e-64 248.4 218 57.8
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.0e-62 244.2 160 70.0
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 3.6e-60 235.7 163 69.3
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 3.6e-60 235.7 163 69.3
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 5.3e-59 231.9 194 61.9
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 6.9e-59 231.5 181 63.5
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 7.9e-55 218.0 220 46.8
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 2.9e-49 199.5 123 76.4
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 3.8e-41 172.6 128 64.1
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 7.9e-39 164.9 164 53.0
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 7.4e-37 158.3 122 65.6
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 4.1e-35 152.5 93 81.7
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 1.4e-27 127.5 81 76.5
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 1.2e-26 124.4 63 92.1
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.0e-25 121.3 90 67.8
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 6.5e-25 118.6 71 74.6
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 9.7e-21 104.8 55 80.0
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 2.2e-20 103.6 102 56.9
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 2.1e-15 87.0 65 66.2
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 3.0e-14 83.2 153 34.0
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 3.5e-10 69.7 65 52.3


User provided reference genes

Program Settings