Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.8e-142 509.2 255 100.0
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.8e-110 402.9 224 90.6
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.5e-108 394.4 224 87.5
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 4.7e-106 388.3 224 88.8
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.0e-105 385.6 247 80.6
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.8e-105 384.0 225 85.8
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 4.4e-104 381.7 214 87.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 7.4e-104 380.9 224 85.7
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 8.2e-103 377.5 217 85.3
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.1e-102 377.1 217 85.7
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.4e-102 376.7 210 89.5
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 1.4e-102 376.7 209 90.0
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 3.1e-102 375.6 217 84.8
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 3.1e-102 375.6 217 84.8
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 4.1e-102 375.2 231 81.4
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 4.1e-102 375.2 222 82.4
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 5.3e-102 374.8 215 87.4
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.2e-101 373.6 218 84.4
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.2e-101 373.6 217 86.2
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.5e-101 373.2 217 84.8
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 2.0e-101 372.9 213 86.4
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 2.0e-101 372.9 221 84.2
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 4.5e-101 371.7 217 85.3
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 7.7e-101 370.9 221 82.8
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 7.7e-101 370.9 224 83.9
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.2e-100 369.4 221 82.4
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 2.9e-100 369.0 224 83.0
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 5.0e-100 368.2 225 82.2
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 5.0e-100 368.2 217 84.8
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 6.5e-100 367.9 210 87.1
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 8.5e-100 367.5 217 83.9
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 8.5e-100 367.5 222 82.4
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 8.5e-100 367.5 216 85.2
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.1e-99 367.1 225 82.7
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.1e-99 367.1 226 82.7
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.1e-99 367.1 217 84.3
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 2.5e-99 365.9 216 82.9
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 2.5e-99 365.9 221 81.4
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 3.2e-99 365.5 210 87.1
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 3.2e-99 365.5 210 85.7
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.2e-99 365.2 227 81.1
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 4.2e-99 365.2 222 81.5
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 4.2e-99 365.2 217 83.9
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 5.5e-99 364.8 214 85.5
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 5.5e-99 364.8 209 84.7
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 5.5e-99 364.8 217 83.4
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 7.2e-99 364.4 225 81.3
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 7.2e-99 364.4 218 83.9
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 9.4e-99 364.0 216 82.9
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 9.4e-99 364.0 217 82.0
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 9.4e-99 364.0 227 80.6
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.2e-98 363.6 207 87.0
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.6e-98 363.2 219 82.6
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 2.1e-98 362.8 219 82.6
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 2.1e-98 362.8 216 82.4
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 3.6e-98 362.1 216 83.3
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 4.7e-98 361.7 217 83.9
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 4.7e-98 361.7 218 82.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 8.0e-98 360.9 218 81.2
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 8.0e-98 360.9 218 84.4
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.0e-97 360.5 220 84.1
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.0e-97 360.5 217 82.5
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.0e-97 360.5 221 80.1
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-97 360.1 267 71.5
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.8e-97 359.8 209 83.7
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.8e-97 359.8 220 79.5
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.8e-97 359.8 218 81.7
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.3e-97 359.4 223 82.1
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.3e-97 359.4 217 82.0
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 3.0e-97 359.0 226 78.3
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.0e-97 359.0 222 81.1
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 3.0e-97 359.0 221 80.1
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 3.0e-97 359.0 219 81.3
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.2e-97 358.2 220 80.0
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 5.2e-97 358.2 207 84.5
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 8.8e-97 357.5 220 80.0
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 8.8e-97 357.5 219 80.8
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 8.8e-97 357.5 209 84.7
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 8.8e-97 357.5 209 84.7
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.0e-96 356.3 220 80.0
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.0e-96 356.3 214 84.6
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.6e-96 355.9 220 80.0
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.6e-96 355.9 220 80.0
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 4.4e-96 355.1 222 81.5
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 4.4e-96 355.1 209 84.2
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 5.7e-96 354.8 216 80.6
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 5.7e-96 354.8 218 81.2
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 7.4e-96 354.4 218 80.3
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 7.4e-96 354.4 219 79.9
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 9.7e-96 354.0 237 78.1
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.3e-95 353.6 214 81.8
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.7e-95 353.2 206 83.5
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 2.2e-95 352.8 216 80.1
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 2.2e-95 352.8 216 80.6
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.2e-95 352.8 219 79.5
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.8e-95 352.4 215 82.3
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 2.8e-95 352.4 220 80.5
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 3.7e-95 352.1 208 82.7
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 3.7e-95 352.1 224 77.7
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.7e-95 352.1 219 79.5
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 3.7e-95 352.1 224 79.5
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.3e-95 351.3 222 78.8
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 6.3e-95 351.3 220 78.6
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 6.3e-95 351.3 220 78.2
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 6.3e-95 351.3 220 78.6
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 8.2e-95 350.9 222 79.7
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.4e-94 350.1 224 79.5
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.8e-94 349.7 198 85.9
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.0e-92 344.0 201 83.6
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 5.0e-92 341.7 224 77.7
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.2e-90 337.0 219 80.8
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.2e-90 337.0 208 82.2
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 3.0e-89 332.4 220 78.2
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.3e-87 324.7 264 67.4
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.1e-86 323.9 208 79.8
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 3.1e-86 322.4 193 80.3
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 3.8e-84 315.5 219 72.1
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.5e-83 313.5 219 74.9
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.2e-83 312.4 184 83.7
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 3.0e-81 305.8 223 73.1
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.2e-80 303.9 225 72.4
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.5e-80 303.5 193 76.7
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.4e-80 302.0 193 77.7
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.7e-79 300.1 161 88.2
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.7e-79 298.9 201 75.1
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-78 296.6 230 70.4
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.4e-78 295.0 246 66.3
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 2.0e-77 293.1 183 80.3
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 3.5e-77 292.4 170 85.3
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 4.5e-77 292.0 176 85.2
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 5.9e-77 291.6 156 89.1
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 8.6e-76 287.7 167 83.2
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.2e-75 285.4 219 69.9
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 7.2e-75 284.6 161 85.1
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 3.6e-74 282.3 213 67.6
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 8.0e-74 281.2 202 68.8
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.8e-71 272.7 239 64.4
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 9.2e-70 267.7 149 85.2
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 5.9e-69 265.0 187 72.2
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.2e-66 257.3 209 65.6
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 8.0e-66 254.6 208 67.3
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 8.9e-65 251.1 150 82.7
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 2.0e-64 250.0 187 71.1
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 7.5e-64 248.1 154 79.2
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 4.3e-59 232.3 216 60.6
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 2.2e-55 219.9 130 83.1
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 8.3e-55 218.0 143 71.3
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.9e-54 216.9 162 69.1
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 2.3e-52 209.9 131 76.3
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 6.6e-52 208.4 193 48.2
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.7e-47 193.7 131 76.3
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 2.2e-47 193.4 355 39.4
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 4.4e-40 169.1 145 61.4
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 1.1e-35 154.5 180 43.3
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 5.3e-33 145.6 220 38.6
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.5e-32 144.1 84 85.7
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.4e-32 142.9 203 40.4
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.4e-22 110.9 62 83.9
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 2.4e-22 110.2 62 83.9
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.3e-20 104.4 87 69.0
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 7.4e-19 98.6 59 83.1
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.2e-18 95.5 99 58.6
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 9.0e-17 91.7 69 69.6
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.9e-11 73.9 41 87.8
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.3e-11 73.2 40 85.0
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.7e-11 72.4 57 64.9
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 5.7e-11 72.4 118 39.8
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.2e-10 68.6 36 86.1
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 1.2e-08 64.7 32 90.6
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.0e-07 59.3 42 66.7
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 1.9e-06 57.4 31 80.6
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.2e-06 56.6 34 76.5


User provided reference genes

Program Settings