Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 4.1e-170 601.3 301 100.0
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 3.4e-31 139.8 189 49.7
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 2.4e-24 117.1 173 45.7
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 2.9e-22 110.2 174 41.4
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 2.9e-22 110.2 173 43.4
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 2.9e-22 110.2 219 40.6
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 6.4e-22 109.0 173 43.4
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.1e-21 108.2 182 42.9
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.4e-21 107.1 177 43.5
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.2e-21 106.7 179 40.2
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 3.2e-21 106.7 173 43.4
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 5.4e-21 105.9 172 43.0
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.2e-20 104.8 179 42.5
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.6e-20 104.4 178 40.4
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.7e-20 103.6 175 41.7
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.5e-20 103.2 175 42.3
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 6.0e-20 102.4 170 42.9
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.3e-19 101.3 165 43.6
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 3.0e-19 100.1 173 39.3
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 5.1e-19 99.4 171 41.5
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 1.1e-18 98.2 166 41.6
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 1.5e-18 97.8 72 75.0
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 1.9e-18 97.4 186 38.2
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 4.3e-18 96.3 178 40.4
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 5.6e-18 95.9 161 42.2
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 5.6e-18 95.9 171 40.4
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 9.6e-18 95.1 163 39.9
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 9.6e-18 95.1 169 41.4
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.3e-17 94.7 161 42.2
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 3.7e-17 93.2 172 37.2
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 6.2e-17 92.4 175 40.0
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 8.1e-17 92.0 186 38.2
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.1e-16 91.7 161 41.6
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.1e-16 91.7 185 36.2
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 1.4e-16 91.3 176 38.6
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.4e-16 91.3 175 38.9
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.8e-16 90.9 179 36.9
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.8e-16 90.9 168 39.9
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.8e-16 90.9 175 39.4
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.4e-16 90.5 177 41.2
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.4e-16 90.5 166 41.6
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 4.0e-16 89.7 171 38.6
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 4.0e-16 89.7 171 38.6
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 5.3e-16 89.4 171 39.2
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 6.9e-16 89.0 166 36.7
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.2e-15 88.2 171 38.6
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.5e-15 87.8 185 35.7
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 1.5e-15 87.8 166 37.3
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.6e-15 87.0 171 38.6
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 3.4e-15 86.7 171 36.8
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 7.6e-15 85.5 180 35.6
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 7.6e-15 85.5 170 36.5
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 7.6e-15 85.5 176 39.2
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 7.6e-15 85.5 167 36.5
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 9.9e-15 85.1 176 36.9
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.3e-14 84.7 180 37.8
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 2.2e-14 84.0 170 36.5
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 2.9e-14 83.6 174 36.8
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 4.9e-14 82.8 164 37.2
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 6.4e-14 82.4 172 35.5
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 6.4e-14 82.4 175 36.0
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 8.4e-14 82.0 188 38.3
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.9e-13 80.9 178 36.5
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 1.9e-13 80.9 169 37.9
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.9e-13 80.9 193 35.8
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 7.1e-13 79.0 165 34.5
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 7.1e-13 79.0 164 37.8
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 7.1e-13 79.0 168 35.7
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 9.3e-13 78.6 165 35.2
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 9.3e-13 78.6 174 38.5
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 1.2e-12 78.2 165 35.2
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 1.6e-12 77.8 165 35.2
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.6e-12 77.8 165 35.2
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 1.6e-12 77.8 176 36.4
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 2.1e-12 77.4 165 35.2
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 2.7e-12 77.0 180 36.7
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 2.7e-12 77.0 181 35.9
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 2.7e-12 77.0 181 35.9
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 3.5e-12 76.6 170 37.1
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 4.6e-12 76.3 165 34.5
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 7.9e-12 75.5 179 33.0
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.0e-11 75.1 172 36.0
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 1.3e-11 74.7 166 39.2
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 1.3e-11 74.7 176 36.4
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 1.3e-11 74.7 172 36.0
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.3e-11 74.7 174 35.1
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 3.0e-11 73.6 169 34.3
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 3.0e-11 73.6 146 35.6
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 3.9e-11 73.2 119 42.0
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 3.9e-11 73.2 189 33.3
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 6.7e-11 72.4 196 33.7
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.1e-10 71.6 166 33.7
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 1.9e-10 70.9 166 33.1
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 4.3e-10 69.7 164 35.4
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 9.6e-10 68.6 171 34.5
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 8.2e-09 65.5 176 35.8
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.1e-08 65.1 176 34.7
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 2.4e-08 63.9 172 32.6
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 3.1e-08 63.5 179 32.4
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 5.3e-08 62.8 181 34.8
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 7.6e-07 58.9 140 33.6
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.0e-06 58.5 171 33.9
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 1.7e-06 57.8 181 28.7
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 3.8e-06 56.6 57 56.1
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 3.8e-06 56.6 57 56.1


User provided reference genes

Program Settings