Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1431.4 721 100.0
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1219.5 637 95.6
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1214.5 637 95.3
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1207.2 637 94.7
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1204.5 637 94.7
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1203.7 637 93.9
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1203.0 637 94.0
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1200.3 631 94.9
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1198.0 636 93.7
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1196.8 639 93.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1191.8 644 92.7
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1186.8 636 92.3
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1180.2 637 91.4
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1179.1 636 91.5
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1179.1 714 84.2
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1178.7 637 91.5
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1178.7 682 87.0
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1177.2 637 91.2
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1176.4 637 90.7
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1175.6 637 91.5
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1174.8 661 89.0
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1172.9 635 91.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 631 91.3
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 635 91.3
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 661 88.5
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 637 91.4
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 637 90.1
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1169.1 633 91.5
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1169.1 637 91.2
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 637 90.7
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 662 88.7
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1167.1 637 90.6
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 633 90.7
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 633 90.8
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 637 90.6
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 647 89.6
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 633 90.7
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 637 90.4
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 655 88.7
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 637 90.3
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 634 90.5
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1160.6 637 90.3
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1160.2 637 90.0
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 637 89.8
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 637 89.6
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 637 89.5
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 636 89.3
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 636 89.8
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 634 89.7
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1151.7 636 89.6
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 633 90.2
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 636 90.4
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 664 87.0
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 637 90.0
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 634 89.3
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 632 89.7
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 633 89.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 633 89.3
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 633 89.4
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 637 89.2
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 637 88.5
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 631 89.1
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 628 89.8
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 633 88.8
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 630 89.4
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 651 86.6
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 637 88.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 630 88.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 630 88.9
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 630 88.4
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1137.1 630 88.4
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 640 87.3
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 634 87.7
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 634 87.4
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 635 87.4
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 680 82.8
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 680 82.5
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 636 88.1
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 630 88.1
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 630 88.3
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 630 88.3
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 630 88.3
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 630 88.3
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 680 82.4
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1129.8 630 88.1
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1129.8 630 87.9
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1129.4 680 82.6
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1129.0 630 88.1
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1126.7 680 82.1
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 638 86.7
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 637 87.1
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 637 87.9
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1119.4 634 86.6
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 633 87.7
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1116.3 637 86.5
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1113.2 632 87.7
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1101.7 680 81.0
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 628 85.5
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1090.1 628 85.4
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1079.7 647 84.1
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1077.4 628 83.6
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.0e-307 1059.7 582 89.5
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.6e-303 1045.0 631 81.0
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.8e-289 998.4 632 78.0
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.1e-285 986.5 541 90.4
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.4e-285 985.3 534 91.4
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.5e-282 976.1 534 89.5
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 5.8e-279 964.1 657 76.4
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 4.0e-272 941.4 649 74.1
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 3.5e-268 928.3 629 74.2
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 3.0e-267 925.2 523 88.7
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.2e-260 903.3 649 71.2
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.0e-247 859.4 503 86.1
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 4.5e-247 858.2 634 72.4
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 3.0e-243 845.5 503 84.7
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 5.9e-239 831.2 636 70.0
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.3e-235 819.3 646 65.2
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 7.0e-232 807.7 497 81.1
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.6e-228 795.4 638 63.0
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 2.1e-204 716.5 444 81.3
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.7e-196 688.7 533 69.8
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.2e-183 647.5 643 53.7
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 8.1e-180 634.8 446 74.7
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.0e-175 618.6 354 87.3
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.6e-170 603.2 411 76.4
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 6.4e-161 572.0 315 89.2
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 2.1e-156 557.0 298 93.0
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 6.9e-139 498.8 271 89.7
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 3.5e-114 416.8 527 42.5
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 6.3e-100 369.4 201 89.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.4e-93 346.7 264 68.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 5.2e-86 323.2 184 86.4
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 3.0e-81 307.4 231 69.3
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 2.3e-78 297.7 163 87.7
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 4.1e-75 287.0 163 85.9
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.6e-73 279.3 637 33.4
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.1e-64 252.3 273 53.8
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 5.2e-54 216.9 261 51.0
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.2e-45 189.1 104 87.5
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 3.2e-43 181.0 99 91.9
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 5.4e-43 180.3 104 83.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.3e-41 175.6 104 81.7
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.8e-41 175.3 160 63.1
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 8.4e-36 156.4 90 86.7
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 2.4e-35 154.8 91 83.5
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 4.2e-35 154.1 91 82.4
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 7.1e-35 153.3 86 81.4
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 9.3e-35 152.9 125 64.0
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 8.2e-31 139.8 74 85.1
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 7.6e-21 106.7 53 96.2
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.2e-20 105.1 116 52.6
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 2.5e-19 101.7 104 56.7
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.3e-17 95.9 70 65.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.9e-17 94.4 51 86.3
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.7e-16 90.5 63 66.7
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 7.4e-16 90.1 49 85.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 7.7e-13 80.1 56 64.3
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 3.9e-09 67.8 43 74.4


User provided reference genes

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