Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023723 Lotus japonicus HOM05D008280 ORTHO05D010492 9.9e-115 416.8 207 100.0
LjContig00315g0024501 Lotus japonicus HOM05D008280 ORTHO05D010492 9.9e-115 416.8 207 100.0
Medtr0141s0020 Medicago truncatula HOM05D008280 ORTHO05D010492 1.8e-111 406.0 207 97.6
TPR.G21718 Trifolium pratense HOM05D008280 ORTHO05D010492 8.7e-111 403.7 207 97.1
Lalb_Chr00c29g0408141 Lupinus albus HOM05D008280 ORTHO05D010492 4.5e-107 391.3 207 94.2
Sed0015016 Sechium edule HOM05D008280 ORTHO05D010492 2.1e-104 382.5 207 91.3
arahy.Tifrunner.gnm1.ann1.U3KMBF Arachis hypogaea HOM05D008280 ORTHO05D010492 1.0e-103 380.2 195 96.4
CAN.G1126.5 Capsicum annuum HOM05D008280 ORTHO05D010492 3.9e-103 378.3 207 92.3
CAN.G1159.15 Capsicum annuum HOM05D008280 ORTHO05D010492 3.9e-103 378.3 207 92.3
CAN.G266.10 Capsicum annuum HOM05D008280 ORTHO05D010492 3.9e-103 378.3 207 92.3
Solyc00g020040.1 Solanum lycopersicum HOM05D008280 ORTHO05D010492 3.9e-103 378.3 207 92.3
RcHm_v2.0_MTg0498291 Rosa chinensis HOM05D008280 ORTHO05D010492 8.7e-103 377.1 207 91.3
BNapus_Darmor_BZH_scaffold_234p00070 Brassica napus HOM05D008280 ORTHO05D010492 1.5e-102 376.3 207 91.8
BolSC28t60354H Brassica oleracea HOM05D008280 ORTHO05D010492 1.5e-102 376.3 207 91.8
BraSC159t45719Z Brassica rapa HOM05D008280 ORTHO05D010492 1.5e-102 376.3 207 91.8
BraSC77t46666Z Brassica rapa HOM05D008280 ORTHO05D010492 1.5e-102 376.3 207 91.8
CARHR282640 Cardamine hirsuta HOM05D008280 ORTHO05D010492 1.5e-102 376.3 207 91.8
Sp3g25740 Schrenkiella parvula HOM05D008280 ORTHO05D010492 1.5e-102 376.3 207 91.8
Lj2P1227T101 Lonicera japonica HOM05D008280 ORTHO05D010492 3.7e-101 371.7 207 90.8
ATMG00110 Arabidopsis thaliana HOM05D008280 ORTHO05D010492 1.1e-100 370.2 207 90.8
DCAR_032445 Daucus carota HOM05D008280 ORTHO05D010492 1.8e-100 369.4 207 89.9
SalBow1G8376 Salvia bowleyana HOM05D008280 ORTHO05D010492 9.0e-100 367.1 207 89.9
HanXRQMTg0579251 Helianthus annuus HOM05D008280 ORTHO05D010492 2.0e-99 365.9 207 89.9
Nn1g10160 Nelumbo nucifera HOM05D008280 ORTHO05D010492 4.5e-99 364.8 207 88.9
CANSAT16G0019 Cannabis sativa HOM05D008280 ORTHO05D010492 1.7e-98 362.8 207 89.9
Potri.007G061721 Populus trichocarpa HOM05D008280 ORTHO05D010492 2.9e-98 362.1 207 89.9
BraSC48t46257Z Brassica rapa HOM05D008280 ORTHO05D010492 3.2e-97 358.6 196 91.8
Lsat_1_v5_gn_7_99841 Lactuca sativa HOM05D008280 ORTHO05D010492 4.2e-97 358.2 207 88.4
CAN.G72.16 Capsicum annuum HOM05D008280 ORTHO05D010492 4.5e-91 338.2 207 84.5
CAN.G362.37 Capsicum annuum HOM05D008280 ORTHO05D010492 1.1e-84 317.0 207 80.7
arahy.Tifrunner.gnm1.ann1.9X0QWA Arachis hypogaea HOM05D008280 ORTHO05D010492 2.2e-82 309.3 157 97.5
Eucgr.E02151 Eucalyptus grandis HOM05D008280 ORTHO05D010492 2.9e-82 308.9 177 88.7
arahy.Tifrunner.gnm1.ann1.TAQ3SD Arachis hypogaea HOM05D008280 ORTHO05D010492 1.1e-81 307.0 157 96.8
Sed0028122 Sechium edule HOM05D008280 ORTHO05D010492 2.7e-80 302.4 207 74.9
Nitab4.5_0001796g0300 Nicotiana tabacum HOM05D008280 ORTHO05D010492 5.7e-78 294.7 207 76.3
Nitab4.5_0009703g0040 Nicotiana tabacum HOM05D008280 ORTHO05D010492 2.2e-77 292.7 161 89.4
Nitab4.5_0004471g0100 Nicotiana tabacum HOM05D008280 ORTHO05D010492 2.5e-73 279.3 177 83.6
MBI05_g23314_MAGBIO Magnolia biondii HOM05D008280 ORTHO05D010492 1.2e-67 260.4 150 89.3
SHI07395 Sapria himalayana HOM05D008280 ORTHO05D010492 1.5e-65 253.4 153 83.0
Medtr0094s0120 Medicago truncatula HOM05D008280 ORTHO05D010492 2.4e-60 236.1 132 87.9
Solyc11g028160.1 Solanum lycopersicum HOM05D008280 ORTHO05D010492 3.8e-58 228.8 146 81.5
TAR371G0473 Trochodendron aralioides HOM05D008280 ORTHO05D010492 1.4e-55 220.3 157 75.8
CAN.G21.55 Capsicum annuum HOM05D008280 ORTHO05D010492 2.0e-51 206.5 114 91.2
unitig_87.g27971 Utricularia gibba HOM05D008280 ORTHO05D010492 1.8e-44 183.3 99 92.9
Nn7g37645 Nelumbo nucifera HOM05D008280 ORTHO05D010492 5.4e-44 181.8 100 88.0
CAN.G676.27 Capsicum annuum HOM05D008280 ORTHO05D010492 6.6e-42 174.9 104 84.6
Lsat_1_v5_gn_7_96601 Lactuca sativa HOM05D008280 ORTHO05D010492 1.4e-39 167.2 99 85.9
Nitab4.5_0000978g0030 Nicotiana tabacum HOM05D008280 ORTHO05D010492 3.0e-39 166.0 91 91.2
Psat1g132520 Pisum sativum HOM05D008280 ORTHO05D010492 9.8e-38 161.0 87 96.6
HanXRQChr05g0151451 Helianthus annuus HOM05D008280 ORTHO05D010492 1.4e-36 157.1 96 82.3
Ca_30339_v3 Cicer arietinum L. HOM05D008280 ORTHO05D010492 3.0e-34 149.4 146 58.9
MBI09_g03548_MAGBIO Magnolia biondii HOM05D008280 ORTHO05D010492 1.9e-33 146.7 123 65.0
HanXRQChr03g0087181 Helianthus annuus HOM05D008280 ORTHO05D010492 7.3e-33 144.8 99 77.8
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 8.6e-26 121.3 66 92.4
Gohir.A13G092605 Gossypium hirsutum HOM05D008280 ORTHO05D010492 6.8e-23 111.7 67 88.1
Lj2C1224T22 Lonicera japonica HOM05D008280 ORTHO05D010492 8.9e-23 111.3 59 93.2
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 9.5e-17 91.3 58 72.4
QL08p039717 Quercus lobata HOM05D008280 ORTHO05D010492 4.4e-14 82.4 90 55.6
SHI01507 Sapria himalayana HOM05D008280 ORTHO05D010492 2.0e-06 57.0 48 62.5


User provided reference genes

Program Settings