Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 2.0e-149 532.3 260 100.0
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 1.3e-111 406.8 273 78.4
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 1.7e-111 406.4 273 78.4
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 2.4e-110 402.5 264 76.1
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 4.1e-110 401.7 278 76.3
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 5.4e-110 401.4 262 78.6
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 1.2e-109 400.2 265 74.3
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 2.1e-109 399.4 265 77.4
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 2.1e-109 399.4 266 77.4
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 3.0e-108 395.6 265 75.8
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 2.1e-101 372.9 269 70.3
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 7.8e-101 370.9 271 69.4
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 1.0e-100 370.5 261 70.1
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 1.3e-100 370.2 269 70.6
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 9.6e-99 364.0 261 70.9
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 2.8e-98 362.5 273 67.0
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 3.6e-98 362.1 270 67.4
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 6.9e-97 357.8 260 68.8
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 3.4e-96 355.5 266 66.5
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 5.8e-96 354.8 266 66.2
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 7.6e-96 354.4 251 69.7
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 4.9e-95 351.7 258 69.8
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 6.4e-95 351.3 262 68.7
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 1.4e-94 350.1 268 67.9
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 1.9e-94 349.7 265 67.5
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 3.2e-94 349.0 267 65.2
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 3.2e-94 349.0 264 67.4
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 5.4e-94 348.2 264 67.0
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 5.4e-94 348.2 265 65.7
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 3.5e-93 345.5 278 62.9
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 6.0e-93 344.7 266 65.8
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 7.9e-93 344.4 265 67.5
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 7.9e-93 344.4 258 67.4
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 6.7e-92 341.3 209 76.1
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 6.7e-92 341.3 248 69.0
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 2.5e-91 339.3 262 65.6
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.6e-91 338.2 207 75.4
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.6e-91 338.2 207 75.4
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 9.6e-91 337.4 267 64.4
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 9.6e-91 337.4 260 65.4
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 1.3e-90 337.0 265 66.4
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 1.6e-90 336.7 265 64.9
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 1.6e-90 336.7 261 64.4
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 2.1e-90 336.3 209 75.1
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 2.1e-90 336.3 266 64.7
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 8.1e-90 334.3 265 64.9
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 8.1e-90 334.3 265 64.9
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 8.1e-90 334.3 266 64.3
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 1.1e-89 334.0 263 65.4
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 1.4e-89 333.6 260 63.8
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 1.8e-89 333.2 286 62.6
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 2.4e-89 332.8 269 64.7
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 1.5e-88 330.1 247 68.4
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 4.5e-88 328.6 278 62.9
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 1.3e-87 327.0 221 71.9
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 3.8e-87 325.5 248 67.7
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 6.4e-87 324.7 252 65.5
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 8.4e-87 324.3 226 69.5
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 8.4e-87 324.3 227 69.6
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 5.5e-86 321.6 229 66.8
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 7.1e-86 321.2 261 64.4
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 1.2e-85 320.5 229 67.7
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 7.9e-85 317.8 208 72.1
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 1.0e-84 317.4 208 72.1
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 1.8e-84 316.6 229 66.8
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 2.3e-84 316.2 208 71.2
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 2.3e-84 316.2 208 71.6
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 3.0e-84 315.8 264 63.3
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 3.9e-84 315.5 264 63.6
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 7.4e-83 311.2 260 60.8
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 3.1e-81 305.8 188 76.1
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 6.9e-81 304.7 214 67.3
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 2.9e-79 299.3 175 78.9
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 4.9e-79 298.5 224 64.7
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 4.2e-78 295.4 219 63.0
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 6.0e-77 291.6 241 63.5
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 1.8e-76 290.0 227 65.6
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 1.5e-75 287.0 222 64.0
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 2.5e-75 286.2 233 62.2
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 3.3e-75 285.8 339 49.9
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 8.2e-74 281.2 176 73.3
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 1.8e-73 280.0 174 74.7
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 1.0e-71 274.2 303 50.2
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 1.1e-70 270.8 211 64.5
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 1.8e-68 263.5 268 54.9
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 1.3e-66 257.3 191 64.9
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 2.0e-64 250.0 260 52.7
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 7.7e-64 248.1 197 64.0
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 6.5e-63 245.0 162 71.0
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 3.2e-62 242.7 206 55.8
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 3.0e-60 236.1 198 58.6
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 5.1e-60 235.3 231 54.1
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 9.1e-57 224.6 134 76.9
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.2e-56 224.2 193 56.5
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 1.5e-56 223.8 159 64.2
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 4.5e-56 222.2 170 62.4
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 7.7e-56 221.5 157 65.6
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 5.5e-54 215.3 254 49.6
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 7.0e-49 198.4 171 61.4
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 4.5e-48 195.7 156 64.1
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 1.5e-46 190.7 161 60.2
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 4.2e-46 189.1 196 54.1
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 6.1e-45 185.3 111 78.4
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 6.1e-45 185.3 162 60.5
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 1.0e-44 184.5 113 76.1
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 7.5e-43 178.3 187 48.7
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 1.3e-42 177.6 109 77.1
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 1.1e-41 174.5 159 56.6
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 1.8e-41 173.7 123 71.5
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 1.2e-40 171.0 81 97.5
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 2.1e-37 160.2 107 70.1
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 2.1e-37 160.2 107 70.1
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 2.7e-37 159.8 106 73.6
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 8.8e-36 154.8 93 76.3
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 1.5e-35 154.1 82 84.1
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 5.4e-33 145.6 133 60.9
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 1.9e-30 137.1 93 68.8
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 8.9e-28 128.3 156 50.0
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.6e-21 107.5 60 81.7
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 2.9e-18 96.7 163 36.2


User provided reference genes

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