Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.3e-208 729.6 402 100.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 6.7e-208 727.2 402 99.8
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 6.2e-206 720.7 402 99.3
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.2e-178 628.2 403 87.1
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.2e-178 628.2 403 86.4
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 3.0e-176 622.1 405 86.7
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.5e-170 602.4 404 82.7
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 5.2e-168 594.7 406 84.0
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.6e-167 592.4 406 83.7
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 3.3e-167 592.0 406 83.7
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.3e-166 590.1 423 79.4
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.2e-166 589.3 406 83.3
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 3.8e-163 578.6 402 81.8
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 5.0e-163 578.2 404 80.0
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-162 577.0 402 79.4
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 7.2e-162 574.3 405 80.7
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 4.8e-158 561.6 402 80.3
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 7.0e-157 557.8 402 81.1
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.7e-155 553.1 402 81.1
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.4e-152 543.5 400 78.5
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 5.6e-146 521.5 402 74.4
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-138 496.9 361 77.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.6e-137 493.4 409 69.9
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 6.2e-137 491.5 328 80.8
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.6e-135 486.1 420 68.8
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.9e-134 482.6 424 69.1
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 4.1e-133 478.8 316 85.8
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 4.1e-133 478.8 424 66.7
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.6e-132 476.9 409 68.7
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.0e-131 474.2 348 79.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 4.7e-129 465.3 409 69.7
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 6.2e-129 464.9 408 68.4
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 6.2e-129 464.9 410 68.5
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 6.2e-129 464.9 409 67.2
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 8.1e-129 464.5 408 68.6
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.1e-128 464.2 415 66.7
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.3e-128 463.0 409 68.0
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 3.1e-128 462.6 409 68.9
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.0e-127 459.9 417 66.9
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.7e-126 456.8 405 66.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 4.9e-126 455.3 422 64.9
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.1e-125 454.1 412 64.6
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 6.0e-124 448.4 406 66.5
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.3e-123 447.2 420 65.7
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 3.9e-123 445.7 407 66.6
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 1.2e-121 440.7 411 65.2
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.7e-121 438.7 437 63.6
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.1e-120 437.6 409 62.3
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.1e-120 437.6 408 64.5
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.1e-120 436.0 408 65.9
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.0e-120 435.6 408 65.7
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 5.2e-120 435.3 410 63.9
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.2e-119 434.1 417 63.5
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.5e-119 433.7 410 65.1
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.9e-118 428.7 408 64.7
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 8.4e-118 427.9 406 65.0
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 5.4e-117 425.2 408 64.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-116 424.1 406 64.5
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.6e-116 423.7 355 68.5
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.6e-116 423.7 414 63.0
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.7e-116 422.9 411 64.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 4.6e-116 422.2 408 64.0
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 6.0e-116 421.8 355 69.0
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.0e-115 419.5 355 68.7
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 5.1e-115 418.7 410 63.2
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 8.6e-115 417.9 399 62.9
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.9e-114 416.8 412 62.1
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 2.5e-114 416.4 435 60.9
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 3.3e-114 416.0 408 63.0
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.1e-113 413.3 408 63.0
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 4.7e-113 412.1 408 63.5
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 6.2e-113 411.8 342 70.8
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.4e-112 409.8 420 60.7
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 6.9e-112 408.3 407 63.1
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 8.9e-112 407.9 406 61.8
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.2e-111 407.5 410 62.0
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-111 407.5 410 62.0
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.6e-111 406.4 407 61.7
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.8e-111 405.2 406 61.6
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 5.8e-111 405.2 407 63.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.7e-110 403.7 436 60.6
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.7e-110 403.7 444 60.4
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.2e-110 403.3 409 62.3
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.9e-110 402.1 406 61.3
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 6.4e-110 401.7 413 61.5
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 8.4e-110 401.4 419 59.7
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.4e-109 399.8 414 60.4
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.2e-109 399.1 412 61.4
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 4.2e-109 399.1 410 61.0
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.1e-108 396.7 410 61.5
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 4.6e-108 395.6 434 59.7
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 4.6e-108 395.6 429 58.5
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 4.6e-108 395.6 408 60.3
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.3e-107 394.0 412 57.8
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.7e-107 393.7 429 59.2
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-107 393.3 404 61.4
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.0e-107 392.9 409 60.9
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-106 391.0 426 59.2
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.1e-106 391.0 426 59.2
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.5e-106 390.6 412 61.2
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-106 390.6 396 61.1
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.9e-106 390.2 409 60.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 5.6e-106 388.7 411 60.6
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.6e-106 387.9 404 59.9
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.6e-105 386.0 436 58.9
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.1e-104 384.4 340 64.1
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 2.4e-104 383.3 437 58.4
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 2.4e-104 383.3 425 58.6
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 5.3e-104 382.1 439 58.1
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.8e-102 375.9 402 60.0
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 6.4e-102 375.2 410 58.8
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.1e-101 374.4 410 58.5
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.2e-100 370.9 338 66.6
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.1e-96 356.3 408 56.4
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 6.9e-96 355.1 437 53.5
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.5e-95 354.0 339 64.9
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 3.4e-95 352.8 408 54.9
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.3e-91 340.9 445 53.5
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.6e-89 334.0 414 55.3
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 8.1e-89 331.6 327 62.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 5.5e-85 318.9 350 59.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.4e-80 304.3 377 51.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 3.9e-75 286.2 344 52.3
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 3.3e-74 283.1 423 45.9
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.1e-72 276.6 404 50.0
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 9.1e-72 275.0 347 54.8
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.2e-68 264.6 381 50.9
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 7.9e-68 261.9 377 51.5
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 5.1e-67 259.2 410 42.9
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 8.8e-67 258.5 245 66.1
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.8e-65 252.7 417 42.7
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.8e-57 226.9 287 54.7
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 2.3e-51 207.2 212 59.4
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.5e-47 193.4 224 55.8
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.7e-46 191.0 285 47.4
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.8e-46 189.9 219 56.2
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 9.4e-45 185.3 270 52.6
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 9.4e-45 185.3 270 52.6
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.2e-44 184.9 250 48.4
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.2e-44 184.9 319 43.6
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.7e-44 183.7 172 57.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 2.2e-41 174.1 279 40.5
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.8e-35 154.5 374 36.4
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 6.8e-35 152.5 347 40.6
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 2.6e-34 150.6 207 48.3
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 7.8e-31 139.0 104 71.2
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.9e-30 137.1 394 35.0
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 6.6e-30 136.0 109 69.7
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 2.8e-28 130.6 150 59.3
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.1e-24 118.6 215 41.9
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 6.6e-22 109.4 249 31.3
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 3.7e-17 93.6 124 58.9
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.9e-08 64.7 214 27.1
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 9.2e-08 62.4 122 39.3


User provided reference genes

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