Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0015857 Lotus japonicus HOM05D009725 ORTHO05D007788 1.6e-211 739.2 369 100.0
Lj2g0027504 Lotus japonicus HOM05D009725 ORTHO05D007788 4.2e-201 704.5 366 96.7
Medtr5g022270 Medicago truncatula HOM05D009725 ORTHO05D007788 7.6e-33 145.6 320 33.1
Medtr2g022080 Medicago truncatula HOM05D009725 ORTHO05D007788 2.2e-32 144.1 319 32.9
Medtr6g035170 Medicago truncatula HOM05D009725 ORTHO05D007788 4.3e-28 129.8 280 33.2
Medtr4g007830 Medicago truncatula HOM05D011457 ORTHO05D007788 3.9e-21 106.7 138 39.1
Lj4g0022736 Lotus japonicus HOM05D000045 ORTHO05D007788 2.5e-20 104.0 234 30.8
QL10p051876 Quercus lobata HOM05D022192 ORTHO05D009908 3.3e-20 103.6 177 32.8
Lj4g0026673 Lotus japonicus HOM05D011457 ORTHO05D007788 7.4e-20 102.4 192 32.3
QL08p032772 Quercus lobata HOM05D022192 ORTHO05D009908 2.0e-17 94.4 141 35.5
Medtr8g031240 Medicago truncatula HOM05D009725 ORTHO05D007788 7.6e-17 92.4 189 31.2
TPR.G37504 Trifolium pratense HOM05D009725 ORTHO05D007788 2.2e-16 90.9 138 36.2
arahy.Tifrunner.gnm1.ann1.N9YQYJ Arachis hypogaea HOM05D008645 ORTHO05D007788 2.9e-16 90.5 163 35.6
arahy.Tifrunner.gnm1.ann1.PLL5KT Arachis hypogaea HOM05D008645 ORTHO05D007788 5.0e-16 89.7 239 29.7
arahy.Tifrunner.gnm1.ann1.4TSV6W Arachis hypogaea HOM05D008645 ORTHO05D007788 6.5e-16 89.4 189 33.3
arahy.Tifrunner.gnm1.ann1.AL9EYS Arachis hypogaea HOM05D008645 ORTHO05D007788 6.5e-16 89.4 189 33.3
arahy.Tifrunner.gnm1.ann1.GI9T10 Arachis hypogaea HOM05D008645 ORTHO05D007788 6.5e-16 89.4 189 33.3
arahy.Tifrunner.gnm1.ann1.RA57MB Arachis hypogaea HOM05D008645 ORTHO05D007788 1.9e-15 87.8 197 30.5
Medtr4g040020 Medicago truncatula HOM05D009725 ORTHO05D007788 3.2e-15 87.0 97 43.3
Ciclev10031514m.g Citrus clementina HOM05D002639 ORTHO05D010823 5.5e-15 86.3 162 33.3
Ciclev10020105m.g Citrus clementina HOM05D002639 ORTHO05D010823 9.3e-15 85.5 169 32.5
arahy.Tifrunner.gnm1.ann1.T0JM81 Arachis hypogaea HOM05D008645 ORTHO05D007788 4.6e-14 83.2 188 31.9
arahy.Tifrunner.gnm1.ann1.GDDC9H Arachis hypogaea HOM05D008645 ORTHO05D007788 6.1e-14 82.8 195 28.7
Lj1g0017368 Lotus japonicus HOM05D000045 ORTHO05D007788 6.1e-14 82.8 143 36.4
arahy.Tifrunner.gnm1.ann1.5WRS92 Arachis hypogaea HOM05D008645 ORTHO05D007788 7.9e-14 82.4 199 29.1
arahy.Tifrunner.gnm1.ann1.RSA1RP Arachis hypogaea HOM05D008645 ORTHO05D007788 1.3e-13 81.6 287 26.1
arahy.Tifrunner.gnm1.ann1.YV18TB Arachis hypogaea HOM05D008645 ORTHO05D007788 1.3e-13 81.6 200 28.5
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 2.3e-13 80.9 199 29.1
TPR.G22561 Trifolium pratense HOM05D000045 ORTHO05D007788 2.3e-13 80.9 120 40.0
Lj1g0001785 Lotus japonicus HOM05D000045 ORTHO05D007788 3.9e-13 80.1 238 29.4
TPR.G21967 Trifolium pratense HOM05D009725 ORTHO05D007788 3.9e-13 80.1 266 28.2
Rhsim01G0207900 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.5e-12 78.2 137 31.4
TPR.G39315 Trifolium pratense HOM05D009725 ORTHO05D007788 1.5e-12 78.2 147 33.3
arahy.Tifrunner.gnm1.ann1.IRL4YX Arachis hypogaea HOM05D008645 ORTHO05D007788 3.3e-12 77.0 161 29.8
arahy.Tifrunner.gnm1.ann1.AXL83M Arachis hypogaea HOM05D008645 ORTHO05D007788 5.7e-12 76.3 190 31.1
arahy.Tifrunner.gnm1.ann1.S3PUKV Arachis hypogaea HOM05D009036 ORTHO05D011872 9.7e-12 75.5 183 25.7
CSS0040705 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 3.7e-11 73.6 145 29.7
CSS0020947 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 4.8e-11 73.2 145 29.7
Lj6g0005229 Lotus japonicus HOM05D011457 ORTHO05D007788 4.8e-11 73.2 241 26.1
arahy.Tifrunner.gnm1.ann1.E3DKLZ Arachis hypogaea HOM05D009036 ORTHO05D011872 6.3e-11 72.8 186 24.2
arahy.Tifrunner.gnm1.ann1.DQEM0F Arachis hypogaea HOM05D009036 ORTHO05D011872 1.1e-10 72.0 184 22.3
CSS0045207 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 1.1e-10 72.0 132 30.3
arahy.Tifrunner.gnm1.ann1.7H371A Arachis hypogaea HOM05D009036 ORTHO05D011872 1.4e-10 71.6 190 25.3
arahy.Tifrunner.gnm1.ann1.A7DQCV Arachis hypogaea HOM05D011457 ORTHO05D007788 2.4e-10 70.9 105 34.3
Potri.017G018801 Populus trichocarpa HOM05D000455 ORTHO05D050471 2.4e-10 70.9 165 28.5
SGA_v2.0_scaffold81G26003 Striga asiatica HOM05D017631 ORTHO05D009908 2.4e-10 70.9 195 30.8
Rhsim04G0161400 Rhododendron simsii HOM05D012118 ORTHO05D009908 3.1e-10 70.5 136 28.7
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 4.1e-10 70.1 181 29.3
Lj3g0011410 Lotus japonicus HOM05D011457 ORTHO05D007788 4.1e-10 70.1 191 27.2
CANSAT64G0311 Cannabis sativa HOM05D009769 ORTHO05D010823 5.3e-10 69.7 150 29.3
Lj4g0015611 Lotus japonicus HOM05D007728 ORTHO05D009681 5.3e-10 69.7 221 27.1
Potri.017G019466 Populus trichocarpa HOM05D000030 ORTHO05D000009 5.3e-10 69.7 169 29.0
Lj2g0006281 Lotus japonicus HOM05D011457 ORTHO05D007788 6.9e-10 69.3 191 27.2
arahy.Tifrunner.gnm1.ann1.TC2NGU Arachis hypogaea HOM05D010837 ORTHO05D007788 9.0e-10 68.9 189 27.0
Lj4g0006061 Lotus japonicus HOM05D007728 ORTHO05D009681 9.0e-10 68.9 241 23.2
Lj6g0010635 Lotus japonicus HOM05D007728 ORTHO05D009681 9.0e-10 68.9 189 24.9
Medtr8g467430 Medicago truncatula HOM05D009725 ORTHO05D007788 9.0e-10 68.9 94 40.4
arahy.Tifrunner.gnm1.ann1.RT05UY Arachis hypogaea HOM05D009036 ORTHO05D011872 1.2e-09 68.6 184 21.7
FAN05G4774 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.5e-09 68.2 187 28.3
Lj4g0000914 Lotus japonicus HOM05D007728 ORTHO05D009681 1.5e-09 68.2 189 25.9
FAN16G1984 Fragaria x ananassa HOM05D010142 ORTHO05D012232 2.0e-09 67.8 187 28.3
Medtr4g077280 Medicago truncatula HOM05D009725 ORTHO05D007788 2.6e-09 67.4 55 52.7
Lj4g0017512 Lotus japonicus HOM05D007728 ORTHO05D009681 5.9e-09 66.2 178 24.7
arahy.Tifrunner.gnm1.ann1.DG4Z6X Arachis hypogaea HOM05D008645 ORTHO05D007788 7.7e-09 65.9 129 31.8
SGA_v2.0_scaffold74G24629 Striga asiatica HOM05D017631 ORTHO05D009908 7.7e-09 65.9 109 35.8
arahy.Tifrunner.gnm1.ann1.Q3QHXW Arachis hypogaea HOM05D008645 ORTHO05D007788 1.0e-08 65.5 240 26.2
FAN14G0448 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.7e-08 64.7 161 29.2
Lj5g0026008 Lotus japonicus HOM05D016573 ORTHO05D009681 1.7e-08 64.7 165 24.2
arahy.Tifrunner.gnm1.ann1.M3GBHV Arachis hypogaea HOM05D009036 ORTHO05D011872 2.2e-08 64.3 179 21.2
Lj1g0024522 Lotus japonicus HOM05D007728 ORTHO05D009681 2.2e-08 64.3 191 25.7
QL09p039396 Quercus lobata HOM05D022192 ORTHO05D009908 2.2e-08 64.3 79 41.8
arahy.Tifrunner.gnm1.ann1.TSP5BT Arachis hypogaea HOM05D009036 ORTHO05D011872 3.8e-08 63.5 142 23.9
FAN05G5253 Fragaria x ananassa HOM05D010142 ORTHO05D012232 3.8e-08 63.5 171 28.7
HPP92_000409 Vanilla planifolia HOM05D002639 ORTHO05D003094 3.8e-08 63.5 157 26.1
arahy.Tifrunner.gnm1.ann1.P8R7I9 Arachis hypogaea HOM05D009036 ORTHO05D011872 5.0e-08 63.2 142 23.9
COL.COLO4_35220 Corchorus olitorius HOM05D019362 ORTHO05D013856 5.0e-08 63.2 181 23.8
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 6.5e-08 62.8 92 33.7
SGA_v2.0_scaffold67G22629 Striga asiatica HOM05D002639 ORTHO05D003094 6.5e-08 62.8 185 24.9
FAN23G0071 Fragaria x ananassa HOM05D010142 ORTHO05D012232 8.5e-08 62.4 187 27.3
Lj4g0007695 Lotus japonicus HOM05D007728 ORTHO05D009681 8.5e-08 62.4 184 21.7
arahy.Tifrunner.gnm1.ann1.MRZ5LS Arachis hypogaea HOM05D007728 ORTHO05D009681 1.1e-07 62.0 122 32.0
CSS0025382 Camellia sinensis var. sinensis HOM05D012118 ORTHO05D009908 1.1e-07 62.0 90 32.2
Solyc01g066830.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 1.1e-07 62.0 124 29.8
TPR.G30128 Trifolium pratense HOM05D009725 ORTHO05D007788 1.1e-07 62.0 62 38.7
ECA246G1134 Erigeron canadensis HOM05D002639 ORTHO05D003094 1.4e-07 61.6 133 27.1
FAN05G1903 Fragaria x ananassa HOM05D017852 ORTHO05D010823 1.4e-07 61.6 154 31.2
Lj6g0011981 Lotus japonicus HOM05D007728 ORTHO05D009681 1.4e-07 61.6 186 22.0
Nitab4.5_0008499g0020 Nicotiana tabacum HOM05D002639 ORTHO05D003094 1.4e-07 61.6 136 29.4
FvH4_7g31231 Fragaria vesca HOM05D017852 ORTHO05D010823 1.9e-07 61.2 158 30.4
arahy.Tifrunner.gnm1.ann1.1776EG Arachis hypogaea HOM05D009036 ORTHO05D011872 2.5e-07 60.8 142 23.2
Lj6g0022050 Lotus japonicus HOM05D007728 ORTHO05D009681 2.5e-07 60.8 199 22.1
arahy.Tifrunner.gnm1.ann1.3VIF24 Arachis hypogaea HOM05D009036 ORTHO05D011872 3.2e-07 60.5 183 20.8
FvH4_1g23642 Fragaria vesca HOM05D017852 ORTHO05D010823 3.2e-07 60.5 154 30.5
Lj5g0007568 Lotus japonicus HOM05D007728 ORTHO05D009681 3.2e-07 60.5 163 24.5
Sopen01g028430 Solanum pennellii HOM05D002639 ORTHO05D003094 3.2e-07 60.5 157 26.8
arahy.Tifrunner.gnm1.ann1.I7VPNZ Arachis hypogaea HOM05D009036 ORTHO05D011872 4.2e-07 60.1 137 24.8
SGA_v2.0_scaffold142G35697 Striga asiatica HOM05D017631 ORTHO05D009908 4.2e-07 60.1 133 31.6
GSVIVG01017729001 Vitis vinifera HOM05D002639 ORTHO05D003094 4.2e-07 60.1 134 27.6
AUR62041504 Chenopodium quinoa HOM05D002639 ORTHO05D003094 5.5e-07 59.7 124 29.0
Solyc12g099530.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 5.5e-07 59.7 138 29.0
Sopen12g034210 Solanum pennellii HOM05D002639 ORTHO05D003094 5.5e-07 59.7 138 29.0
arahy.Tifrunner.gnm1.ann1.26YFK1 Arachis hypogaea HOM05D007728 ORTHO05D021507 7.2e-07 59.3 168 28.6
A03p49390 Brassica napus HOM05D002639 ORTHO05D003094 7.2e-07 59.3 131 30.5
Cc03_g01820 Coffea canephora HOM05D002639 ORTHO05D003094 7.2e-07 59.3 159 27.7
LjContig00357g0010761 Lotus japonicus HOM05D007728 ORTHO05D009681 7.2e-07 59.3 132 22.7
Prupe.1G135200 Prunus persica HOM05D002639 ORTHO05D003094 7.2e-07 59.3 200 23.5
FAN16G0074 Fragaria x ananassa HOM05D007993 ORTHO05D000898 9.4e-07 58.9 158 26.6
Lj3g0004344 Lotus japonicus HOM05D007728 ORTHO05D009681 9.4e-07 58.9 187 23.5
Dinv29750 Davidia involucrata HOM05D002639 ORTHO05D003094 1.2e-06 58.5 131 28.2
MD13G1167800 Malus domestica HOM05D002639 ORTHO05D003094 1.2e-06 58.5 164 27.4
QL06p009035 Quercus lobata HOM05D002639 ORTHO05D003094 1.2e-06 58.5 124 28.2
PGSC0003DMG400004634 Solanum tuberosum HOM05D002639 ORTHO05D003094 1.2e-06 58.5 129 30.2
CAN.G129.28 Capsicum annuum HOM05D002639 ORTHO05D003094 1.6e-06 58.2 124 28.2
Lj1g0001720 Lotus japonicus HOM05D007728 ORTHO05D009681 1.6e-06 58.2 229 21.0
Lj6g0022916 Lotus japonicus HOM05D007728 ORTHO05D009681 2.1e-06 57.8 161 22.4
MD16G1167200 Malus domestica HOM05D002639 ORTHO05D003094 2.1e-06 57.8 123 29.3
FvH4_6g28332 Fragaria vesca HOM05D017852 ORTHO05D010823 2.7e-06 57.4 154 29.2
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 2.7e-06 57.4 141 24.8
arahy.Tifrunner.gnm1.ann1.AR083C Arachis hypogaea HOM05D038934 ORTHO05D021507 3.6e-06 57.0 179 26.8
ECA240G4557 Erigeron canadensis HOM05D002639 ORTHO05D003094 3.6e-06 57.0 124 28.2
Migut.G00153 Erythranthe guttata HOM05D002639 ORTHO05D003094 3.6e-06 57.0 312 23.4
Dinv08235 Davidia involucrata HOM05D008396 ORTHO05D000898 4.6e-06 56.6 131 30.5
FAN15G3472 Fragaria x ananassa HOM05D008674 ORTHO05D012371 4.6e-06 56.6 160 28.1
Glyma.07G246900 Glycine max HOM05D002639 ORTHO05D003094 4.6e-06 56.6 124 27.4
Lj3A817T82 Lonicera japonica HOM05D002639 ORTHO05D003094 4.6e-06 56.6 132 26.5
Lj1g0007911 Lotus japonicus HOM05D007728 ORTHO05D009681 4.6e-06 56.6 143 22.4
Peaxi162Scf00498g00738 Petunia axillaris HOM05D002639 ORTHO05D003094 4.6e-06 56.6 124 28.2
TPR.G36001 Trifolium pratense HOM05D009725 ORTHO05D007788 4.6e-06 56.6 97 28.9
arahy.Tifrunner.gnm1.ann1.PPER74 Arachis hypogaea HOM05D008645 ORTHO05D007788 6.1e-06 56.2 118 29.7
FvH4_3g37244 Fragaria vesca HOM05D004096 ORTHO05D010213 6.1e-06 56.2 144 25.7
FvH4_4g09443 Fragaria vesca HOM05D010969 ORTHO05D015656 6.1e-06 56.2 137 28.5
HanXRQChr03g0081551 Helianthus annuus HOM05D002639 ORTHO05D003094 6.1e-06 56.2 125 28.0
Lj6A677T76 Lonicera japonica HOM05D002639 ORTHO05D003094 6.1e-06 56.2 147 25.9
Lj1g0012700 Lotus japonicus HOM05D009725 ORTHO05D007788 6.1e-06 56.2 69 42.0
Oeu035678.1 Olea europaea HOM05D002639 ORTHO05D003094 6.1e-06 56.2 148 27.7
Rhsim03G0056000 Rhododendron simsii HOM05D012118 ORTHO05D009908 6.1e-06 56.2 82 29.3
TPR.G3166 Trifolium pratense HOM05D002639 ORTHO05D003094 6.1e-06 56.2 124 25.8
Dinv17345 Davidia involucrata HOM05D008396 ORTHO05D000898 7.9e-06 55.8 97 36.1
Dinv17955 Davidia involucrata HOM05D008396 ORTHO05D000898 7.9e-06 55.8 107 38.3
Migut.N00090 Erythranthe guttata HOM05D002639 ORTHO05D003094 7.9e-06 55.8 123 29.3
FAN02G3705 Fragaria x ananassa HOM05D010142 ORTHO05D012232 7.9e-06 55.8 144 26.4
FAN27G2266 Fragaria x ananassa HOM05D017852 ORTHO05D010823 7.9e-06 55.8 103 33.0
Lj6g0001515 Lotus japonicus HOM05D007728 ORTHO05D009681 7.9e-06 55.8 95 25.3
Medtr4g119970 Medicago truncatula HOM05D002639 ORTHO05D003094 7.9e-06 55.8 125 26.4
Medtr6g069440 Medicago truncatula HOM05D009725 ORTHO05D007788 7.9e-06 55.8 74 36.5
Nitab4.5_0003466g0130 Nicotiana tabacum HOM05D002639 ORTHO05D003094 7.9e-06 55.8 160 26.2
VMungo1215G3056 Vigna mungo HOM05D002639 ORTHO05D003094 7.9e-06 55.8 124 27.4


User provided reference genes

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