Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.6e-197 692.6 347 100.0
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 7.8e-197 690.3 347 99.7
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 3.6e-194 681.4 350 98.3
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 5.4e-190 667.5 347 96.3
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 6.2e-186 654.1 347 93.9
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 3.5e-181 638.3 347 93.7
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 6.2e-178 627.5 350 92.0
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 8.1e-178 627.1 346 92.5
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 6.0e-173 610.9 347 90.5
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 4.3e-171 604.7 347 89.6
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.1e-165 585.9 342 88.3
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 6.2e-162 574.3 350 86.3
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 6.2e-162 574.3 350 86.3
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 6.2e-162 574.3 350 86.3
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 1.1e-161 573.5 350 86.0
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 4.0e-161 571.6 350 85.7
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 4.0e-161 571.6 350 85.7
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 4.9e-159 564.7 351 85.2
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 3.9e-156 555.1 347 83.6
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 1.9e-150 536.2 333 84.7
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 1.4e-145 520.0 257 99.6
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.4e-145 520.0 278 93.9
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.4e-145 520.0 278 93.9
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.7e-143 513.1 311 84.6
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 6.7e-140 501.1 325 81.2
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 6.7e-140 501.1 325 81.2
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 4.1e-137 491.9 281 89.7
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 3.9e-132 475.3 278 86.0
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 2.9e-127 459.1 297 81.8
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 7.4e-123 444.5 255 88.6
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.8e-116 423.3 290 76.6
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 4.7e-109 398.7 235 88.5
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 6.3e-106 388.3 227 87.7
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.1e-105 387.5 197 99.0
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 1.8e-105 386.7 248 81.0
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 2.4e-105 386.3 341 65.4
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 2.7e-104 382.9 256 78.9
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 5.0e-103 378.6 228 86.4
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 3.6e-101 372.5 209 89.5
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 5.7e-99 365.2 202 92.1
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 1.6e-93 347.1 347 60.5
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 6.1e-93 345.1 201 88.1
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 3.1e-92 342.8 215 83.3
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 7.5e-91 338.2 189 91.0
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 8.3e-90 334.7 200 85.5
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 2.6e-83 313.2 197 81.2
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 2.6e-83 313.2 197 81.2
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 2.6e-83 313.2 197 81.2
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 3.3e-78 296.2 146 99.3
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 8.6e-71 271.6 227 64.3
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 9.9e-67 258.1 149 88.6
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 8.4e-66 255.0 164 81.1
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 5.4e-65 252.3 199 69.8
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.8e-61 239.2 173 73.4
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 2.4e-60 236.9 175 73.1
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 2.4e-60 236.9 263 55.1
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.7e-58 230.7 139 82.7
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.2e-58 230.3 135 84.4
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 1.4e-57 227.6 253 54.2
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 1.4e-57 227.6 253 54.5
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 6.2e-53 212.2 152 73.0
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 6.2e-53 212.2 152 73.0
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 6.2e-53 212.2 152 73.0
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 6.2e-53 212.2 152 73.0
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 1.4e-52 211.1 134 80.6
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 9.0e-52 208.4 149 74.5
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.0e-51 207.2 134 80.6
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 4.9e-50 202.6 174 63.8
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 1.1e-49 201.4 138 81.9
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-46 190.7 134 73.9
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.4e-43 179.9 127 72.4
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 1.4e-41 174.5 91 92.3
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.0e-40 169.1 88 93.2
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.6e-38 161.8 137 62.0
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 1.2e-35 154.8 103 77.7
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 1.6e-32 144.4 110 67.3
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 7.9e-32 142.1 98 69.4
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.3e-30 136.3 92 79.3
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.2e-29 134.0 110 66.4
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.4e-28 130.6 184 46.7
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 4.1e-28 129.8 80 83.8
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 3.0e-23 113.6 83 73.5
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.5e-22 110.5 98 63.3
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 4.3e-22 109.8 119 57.1
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.3e-20 102.8 58 84.5
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 5.9e-19 99.4 58 84.5
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.7e-19 99.0 64 82.8
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 5.5e-17 92.8 95 53.7
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 1.2e-16 91.7 122 43.4
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 1.8e-15 87.8 135 52.6
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 8.8e-15 85.5 50 78.0
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.3e-12 76.3 62 62.9
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 7.7e-11 72.4 37 94.6
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 1.5e-09 68.2 36 86.1
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.4e-09 65.5 47 80.9
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.0e-08 62.4 41 75.6
CSS0018598 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 5.2e-07 59.7 45 64.4


User provided reference genes

Program Settings