Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 0.0e+00 1549.6 815 100.0
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 0.0e+00 1215.3 797 77.9
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 0.0e+00 1204.1 797 77.4
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 0.0e+00 1197.6 795 76.2
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 0.0e+00 1176.8 794 75.9
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 0.0e+00 1174.8 797 75.9
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 0.0e+00 1172.1 797 75.2
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 0.0e+00 1164.1 797 73.7
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 0.0e+00 1112.4 780 74.1
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 0.0e+00 1080.5 798 70.1
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 1.5e-275 953.0 785 62.2
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 1.6e-272 943.0 798 60.4
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 2.7e-272 942.2 791 61.2
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 2.7e-272 942.2 784 62.1
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 1.6e-269 932.9 807 60.3
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.3e-268 929.1 790 62.4
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 2.6e-267 925.6 783 61.8
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 9.8e-267 923.7 811 60.4
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 2.2e-266 922.5 815 59.3
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 1.1e-265 920.2 784 62.1
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.1e-265 920.2 785 61.4
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 7.8e-264 914.1 782 59.3
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.3e-263 912.5 791 59.5
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 8.6e-263 910.6 772 61.3
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.5e-262 909.8 804 59.5
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.5e-262 909.8 794 60.8
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.2e-261 906.7 771 59.8
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 2.6e-259 899.0 788 61.9
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 4.4e-259 898.3 811 58.2
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 6.4e-258 894.4 832 57.8
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 1.6e-256 889.8 753 61.2
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.6e-256 889.8 781 58.5
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.0e-256 887.9 795 59.1
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.1e-254 883.6 792 59.1
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 1.5e-254 883.2 776 59.0
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.3e-254 881.7 803 57.9
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.6e-253 879.8 792 59.0
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 2.1e-253 879.4 796 57.5
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 2.8e-253 879.0 798 56.9
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 8.1e-253 877.5 799 58.7
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.0e-251 872.8 813 56.8
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 2.6e-251 872.5 809 57.5
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 7.6e-251 870.9 794 58.6
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.1e-249 867.1 795 57.2
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.9e-249 866.3 794 57.6
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.0e-247 860.5 800 56.5
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 3.0e-247 859.0 783 57.1
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 8.7e-247 857.4 784 56.9
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 6.2e-245 851.3 804 56.7
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 1.4e-244 850.1 789 55.8
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 9.0e-244 847.4 828 55.7
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 3.8e-242 842.0 802 56.5
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 4.2e-241 838.6 794 56.4
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.2e-240 837.0 787 56.4
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.2e-240 837.0 807 56.3
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.2e-240 837.0 791 54.6
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 4.6e-240 835.1 802 56.1
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 9.6e-238 827.4 786 55.9
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 1.8e-236 823.2 797 55.6
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 3.2e-233 812.4 662 61.3
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 5.4e-233 811.6 807 55.3
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 7.1e-233 811.2 806 53.8
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 7.9e-232 807.7 756 55.7
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 8.7e-231 804.3 787 52.1
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 2.5e-230 802.7 789 52.9
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.3e-229 800.4 806 55.0
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.1e-229 799.7 792 54.8
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 3.7e-229 798.9 808 53.2
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 6.2e-229 798.1 812 53.1
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.1e-228 797.3 777 55.6
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 1.1e-225 787.3 790 51.4
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 1.9e-225 786.6 790 51.9
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 5.5e-225 785.0 789 51.1
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 9.3e-225 784.3 787 51.8
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 2.7e-224 782.7 784 52.2
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 1.0e-223 780.8 784 51.8
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.0e-223 780.8 787 53.0
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.0e-223 780.8 794 52.5
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 3.0e-223 779.2 801 51.3
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.1e-222 777.3 837 52.3
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 3.3e-222 775.8 796 54.3
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 5.6e-222 775.0 793 51.2
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.6e-221 773.5 786 51.4
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 3.8e-218 762.3 783 49.9
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 3.8e-218 762.3 798 52.3
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 1.1e-217 760.8 786 51.0
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.5e-217 759.6 539 73.7
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 3.3e-214 749.2 801 49.3
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 4.2e-209 732.3 796 51.6
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.3e-205 720.7 795 48.2
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 1.1e-204 717.6 783 51.6
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.5e-203 713.8 702 54.0
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 7.7e-203 711.4 787 51.2
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 7.2e-201 704.9 803 48.8
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 1.4e-199 700.7 559 61.9
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 2.2e-197 693.3 790 49.2
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.9e-194 682.9 483 68.9
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.5e-194 681.8 759 48.0
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.6e-176 622.9 610 55.9
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 8.0e-176 621.7 678 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 8.6e-162 575.1 815 41.0
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 1.5e-161 574.3 829 40.4
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.2e-155 554.7 723 42.3
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 1.6e-155 554.3 807 41.0
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 8.6e-154 548.5 587 51.4
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 1.1e-143 515.0 392 62.5
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 7.3e-137 492.3 773 38.3
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.6e-131 474.6 390 59.7
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.9e-117 427.2 449 50.6
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.3e-114 418.3 467 51.8
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 1.1e-105 388.7 423 49.4
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 2.5e-92 344.4 391 51.7
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 7.2e-92 342.8 422 49.3
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 7.7e-86 322.8 402 49.5
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 2.1e-83 314.7 530 35.1
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.8e-82 311.6 477 43.0
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 1.9e-68 265.0 231 54.5
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 5.5e-68 263.5 193 67.9
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 8.9e-50 203.0 356 40.4
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.3e-45 189.1 190 55.8
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 1.2e-35 156.0 487 26.5
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 6.0e-30 137.1 178 47.8
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 2.5e-28 131.7 193 39.4
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 4.4e-25 120.9 210 35.7
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.7e-24 119.0 94 58.5
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 2.9e-24 118.2 80 67.5
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 6.6e-21 107.1 92 56.5
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 1.1e-20 106.3 125 55.2
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.7e-14 85.1 128 38.3
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 3.0e-13 81.6 171 38.6
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 2.8e-11 75.1 67 50.7
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 6.9e-10 70.5 360 27.2
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 1.2e-09 69.7 55 65.5
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 1.2e-09 69.7 55 65.5
CBR_g472 Chara braunii HOM05D003126 ORTHO05D001316 1.3e-08 66.2 75 42.7
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 1.4e-07 62.8 45 64.4
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 1.4e-07 62.8 45 64.4
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.4e-07 62.8 49 73.5
AagrBONN_evm.TU.Sc2ySwM_368.1156 Anthoceros agrestis HOM05D006053 ORTHO05D008381 1.9e-07 62.4 85 37.6
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.9e-07 62.4 53 66.0
Mapoly0121s0015 Marchantia polymorpha HOM05D006053 ORTHO05D008381 2.4e-07 62.0 93 35.5
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 4.2e-07 61.2 41 68.3
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 1.2e-06 59.7 97 38.1
CDE04G3245 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 2.7e-06 58.5 73 37.0
MCO03G481 Micromonas commoda HOM05D006053 ORTHO05D008381 2.7e-06 58.5 81 38.3
HPP92_006599 Vanilla planifolia HOM05D006053 ORTHO05D008381 2.7e-06 58.5 90 32.2
Zm00001eb001700 Zea mays HOM05D006053 ORTHO05D008381 2.7e-06 58.5 85 38.8
BcaC06g32892 Brassica carinata HOM05D008164 ORTHO05D010222 3.5e-06 58.2 38 68.4
SEGI_13206 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 3.5e-06 58.2 76 44.7
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 4.6e-06 57.8 79 40.5
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 6.0e-06 57.4 104 40.4
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 6.0e-06 57.4 104 40.4
Os03g0123200 Oryza sativa ssp. japonica HOM05D006053 ORTHO05D008381 7.9e-06 57.0 85 37.6
PSO170G0504 Papaver somniferum HOM05D003126 ORTHO05D010530 7.9e-06 57.0 83 34.9


User provided reference genes

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