Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 4.1e-78 294.7 151 100.0
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 4.2e-14 82.0 48 85.4
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 9.7e-11 70.9 48 70.8
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 9.7e-11 70.9 48 70.8
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 1.7e-10 70.1 48 68.8
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 1.7e-10 70.1 48 66.7
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 2.2e-10 69.7 48 72.9
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 2.2e-10 69.7 48 68.8
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 2.8e-10 69.3 48 66.7
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 2.8e-10 69.3 48 70.8
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 2.8e-10 69.3 48 68.8
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 4.8e-10 68.6 48 66.7
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 4.8e-10 68.6 48 66.7
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 4.8e-10 68.6 48 66.7
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 6.3e-10 68.2 48 64.6
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 6.3e-10 68.2 48 70.8
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 8.2e-10 67.8 48 64.6
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 8.2e-10 67.8 48 64.6
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 8.2e-10 67.8 48 66.7
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 1.1e-09 67.4 48 66.7
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 1.8e-09 66.6 48 60.4
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 2.4e-09 66.2 90 40.0
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.4e-09 66.2 48 64.6
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.4e-09 66.2 48 64.6
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 3.1e-09 65.9 48 64.6
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 4.1e-09 65.5 48 66.7
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 4.1e-09 65.5 48 64.6
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.1e-09 65.5 66 56.1
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 4.1e-09 65.5 48 64.6
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 5.3e-09 65.1 48 64.6
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 7.0e-09 64.7 48 64.6
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 7.0e-09 64.7 48 64.6
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 9.1e-09 64.3 48 60.4
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 9.1e-09 64.3 48 60.4
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.1e-09 64.3 48 62.5
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 9.1e-09 64.3 48 62.5
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 9.1e-09 64.3 48 64.6
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 1.2e-08 63.9 48 62.5
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.2e-08 63.9 48 60.4
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.2e-08 63.9 48 60.4
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 1.6e-08 63.5 48 62.5
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.6e-08 63.5 48 62.5
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 2.0e-08 63.2 48 58.3
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 2.7e-08 62.8 48 60.4
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 3.5e-08 62.4 48 60.4
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 3.5e-08 62.4 48 58.3
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 4.5e-08 62.0 48 64.6
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 4.5e-08 62.0 48 64.6
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 5.9e-08 61.6 48 60.4
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 5.9e-08 61.6 48 60.4
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 5.9e-08 61.6 48 60.4
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 7.7e-08 61.2 48 60.4
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 7.7e-08 61.2 48 58.3
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 1.0e-07 60.8 48 56.2
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 1.0e-07 60.8 48 62.5
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.3e-07 60.5 48 62.5
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.3e-07 60.5 48 62.5
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 1.3e-07 60.5 48 54.2
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 1.7e-07 60.1 48 56.2
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 2.2e-07 59.7 48 56.2
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.2e-07 59.7 48 60.4
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 3.8e-07 58.9 48 56.2
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 5.0e-07 58.5 48 58.3
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 5.0e-07 58.5 48 58.3
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 6.5e-07 58.2 48 58.3
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 6.5e-07 58.2 48 56.2
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 6.5e-07 58.2 90 36.7
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 1.1e-06 57.4 103 37.9
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 1.9e-06 56.6 48 54.2
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 1.9e-06 56.6 48 54.2
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 1.9e-06 56.6 48 50.0
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 2.5e-06 56.2 48 58.3
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 2.5e-06 56.2 48 58.3
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 2.5e-06 56.2 48 60.4
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 3.2e-06 55.8 94 34.0
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 7.2e-06 54.7 48 54.2
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 7.2e-06 54.7 48 54.2


User provided reference genes

Program Settings