Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 0.0e+00 1395.9 704 100.0
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.2e-199 700.7 775 54.7
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 3.0e-171 606.3 760 50.1
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 3.6e-156 556.2 767 47.8
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.4e-144 517.7 712 47.6
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.5e-138 497.7 769 44.3
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.0e-134 485.0 768 43.9
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 3.6e-124 449.9 727 44.3
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.4e-123 448.0 728 42.9
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 7.0e-120 435.6 749 42.6
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 7.0e-120 435.6 726 45.0
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 4.5e-119 433.0 768 40.0
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 9.5e-117 425.2 770 40.9
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 9.5e-117 425.2 750 41.7
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.8e-116 423.7 762 41.7
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 7.8e-111 405.6 721 40.9
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 6.4e-97 359.4 777 37.5
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.7e-78 298.1 705 35.3
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.3e-78 297.7 654 37.2
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 5.8e-74 283.1 640 35.2
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.3e-73 282.0 738 32.9
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.6e-71 275.0 738 32.8
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.0e-65 255.8 784 31.2
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.7e-65 255.0 650 34.3
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 4.6e-63 246.9 770 30.5
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 7.4e-61 239.6 768 28.8
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 9.6e-61 239.2 767 30.0
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.1e-59 235.7 796 30.0
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 4.5e-58 230.3 799 31.2
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 2.2e-57 228.0 777 31.0
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 5.5e-56 223.4 800 30.2
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 3.9e-54 217.2 796 29.4
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 6.7e-54 216.5 599 32.7
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 8.7e-54 216.1 795 30.2
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.1e-53 215.7 771 28.1
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 3.3e-53 214.2 759 29.6
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.3e-53 213.8 781 28.4
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 6.3e-52 209.9 783 30.0
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 1.1e-51 209.1 776 28.5
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.6e-50 204.5 766 28.6
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.7e-50 203.0 793 28.4
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.7e-49 201.8 772 30.4
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.9e-49 201.1 818 28.0
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.8e-49 200.7 738 28.2
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 5.0e-49 200.3 793 28.4
Glyma.20G205250 Glycine max HOM05D005259 ORTHO05D006402 6.5e-49 199.9 170 61.8
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.2e-48 197.6 791 27.8
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 5.5e-48 196.8 816 26.7
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 9.4e-48 196.1 757 28.3
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 7.9e-47 193.0 762 28.5
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 3.3e-45 187.6 300 44.0
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 5.7e-45 186.8 778 27.2
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.7e-44 185.3 790 27.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.3e-44 183.3 805 27.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 4.2e-40 170.6 785 26.2
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 2.3e-38 164.9 761 26.7
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.7e-36 158.7 712 26.7
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 2.2e-36 158.3 790 26.5
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.8e-36 157.9 746 26.9
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.0e-33 149.4 679 27.7
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 6.5e-33 146.7 506 28.3
Glyma.20G205301 Glycine max HOM05D005259 ORTHO05D006402 7.2e-32 143.3 181 50.3
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 9.4e-32 142.9 774 26.7
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.2e-31 142.5 755 25.4
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.1e-31 141.7 780 25.6
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 5.2e-30 137.1 787 26.2
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 8.8e-30 136.3 774 24.8
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.1e-29 136.0 832 24.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.4e-27 129.0 564 27.0
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.4e-27 129.0 836 24.2
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.8e-27 128.6 746 25.3
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.8e-27 128.6 743 27.3
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.2e-26 125.9 748 24.6
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 6.5e-25 120.2 715 27.3
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.5e-25 119.8 732 25.7
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 3.2e-24 117.9 716 27.0
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 6.1e-23 113.6 746 24.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.3e-22 111.7 853 24.5
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 3.0e-22 111.3 756 24.7
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 3.0e-22 111.3 816 24.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 4.0e-22 110.9 742 25.3
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.2e-21 109.4 739 22.9
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 3.4e-21 107.8 641 24.8
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 7.5e-21 106.7 797 23.7
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 9.8e-21 106.3 623 24.7
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 9.8e-21 106.3 476 27.3
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.3e-20 105.9 736 25.0
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.7e-20 105.5 853 22.9
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 4.8e-20 104.0 803 23.4
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.4e-19 101.7 626 25.2
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.0e-18 98.6 499 26.9
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 3.5e-18 97.8 628 25.3
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.0e-17 94.0 635 24.4
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.2e-16 91.3 282 29.4
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.2e-16 90.1 704 23.7
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.0e-10 72.0 377 25.7
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.9e-09 68.2 508 24.4
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.9e-09 68.2 175 32.0
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 3.3e-08 64.7 98 40.8
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.3e-08 64.7 94 39.4
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 3.3e-08 64.7 715 22.0
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 5.6e-08 63.9 423 24.1
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.2e-07 62.8 118 34.7
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 6.1e-07 60.5 383 23.5


User provided reference genes

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