Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 5.8e-65 250.8 127 100.0
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 5.8e-57 224.2 124 87.9
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 2.9e-56 221.9 125 86.4
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 2.9e-56 221.9 124 87.1
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 3.8e-56 221.5 125 84.8
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 3.8e-56 221.5 125 84.8
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 8.4e-56 220.3 124 86.3
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 1.4e-55 219.5 125 86.4
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 3.2e-55 218.4 124 83.9
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 4.1e-55 218.0 125 86.4
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 5.4e-55 217.6 124 83.9
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 9.2e-55 216.9 125 86.4
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 2.7e-54 215.3 124 84.7
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 3.5e-54 214.9 122 84.4
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 4.6e-54 214.5 124 84.7
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 3.0e-53 211.8 124 83.9
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 3.9e-53 211.5 119 83.2
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 5.1e-53 211.1 124 82.3
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 5.1e-53 211.1 121 83.5
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 8.7e-53 210.3 125 83.2
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 1.1e-52 209.9 125 82.4
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.1e-52 209.9 124 80.6
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.5e-52 208.8 124 83.9
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 4.3e-52 208.0 124 82.3
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 7.3e-52 207.2 125 80.0
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 9.6e-52 206.8 122 80.3
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 1.2e-51 206.5 123 80.5
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.2e-51 206.5 124 82.3
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.1e-51 205.7 125 79.2
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.1e-51 205.7 125 79.2
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.1e-51 205.7 124 79.8
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 3.6e-51 204.9 122 81.1
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 3.6e-51 204.9 122 84.4
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 6.2e-51 204.1 122 78.7
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 6.2e-51 204.1 127 74.8
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 6.2e-51 204.1 125 78.4
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 8.1e-51 203.8 122 81.1
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 8.1e-51 203.8 125 78.4
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.1e-50 203.4 122 81.1
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 1.4e-50 203.0 122 81.1
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.8e-50 202.6 124 80.6
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 1.8e-50 202.6 122 81.1
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 122 81.1
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 122 81.1
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 1.8e-50 202.6 122 81.1
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 1.8e-50 202.6 122 81.1
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.8e-50 202.6 122 78.7
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.8e-50 202.6 125 78.4
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 2.4e-50 202.2 122 79.5
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 2.4e-50 202.2 124 79.0
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 4.0e-50 201.4 125 77.6
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 4.0e-50 201.4 122 80.3
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 4.0e-50 201.4 119 82.4
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 4.0e-50 201.4 122 77.9
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 5.2e-50 201.1 122 80.3
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 5.2e-50 201.1 127 71.7
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 5.2e-50 201.1 158 67.7
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 5.2e-50 201.1 122 81.1
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 5.2e-50 201.1 122 80.3
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.9e-50 200.7 121 79.3
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 6.9e-50 200.7 122 79.5
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 6.9e-50 200.7 124 78.2
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 9.0e-50 200.3 122 79.5
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 9.0e-50 200.3 121 80.2
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 9.0e-50 200.3 122 79.5
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.2e-49 199.9 127 74.0
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.2e-49 199.9 118 78.0
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.5e-49 199.5 121 76.9
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.0e-49 199.1 124 79.8
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.0e-49 199.1 124 79.8
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.0e-49 199.1 122 77.9
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.0e-49 199.1 121 80.2
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 2.6e-49 198.7 124 77.4
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 2.6e-49 198.7 122 77.9
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 3.4e-49 198.4 124 78.2
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 3.4e-49 198.4 122 77.9
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 5.8e-49 197.6 125 78.4
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 9.9e-49 196.8 124 76.6
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 9.9e-49 196.8 122 79.5
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.3e-48 196.4 121 81.8
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 4.9e-48 194.5 122 77.0
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 4.9e-48 194.5 121 76.9
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 6.4e-48 194.1 121 75.2
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.4e-47 193.0 133 68.4
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.9e-47 192.6 124 75.8
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 1.9e-47 192.6 124 75.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 2.4e-47 192.2 122 76.2
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 4.2e-47 191.4 122 77.9
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 4.2e-47 191.4 110 83.6
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 9.3e-47 190.3 122 77.0
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.2e-46 189.9 122 75.4
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.7e-46 188.7 122 76.2
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 4.6e-46 188.0 124 75.8
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.8e-46 187.2 109 82.6
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.0e-45 186.8 121 73.6
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.0e-45 186.8 121 73.6
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 1.0e-45 186.8 122 77.0
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 1.3e-45 186.4 122 77.0
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.3e-45 186.4 124 75.8
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.7e-45 186.0 122 72.1
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 3.9e-45 184.9 122 72.1
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 6.6e-45 184.1 122 72.1
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.5e-44 183.0 123 70.7
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.5e-44 183.0 122 71.3
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 1.9e-44 182.6 124 74.2
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.9e-44 182.6 124 73.4
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.5e-44 182.2 124 73.4
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 1.6e-43 179.5 119 73.9
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.1e-42 176.8 122 69.7
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 3.1e-42 175.3 122 72.1
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 1.5e-41 172.9 121 69.4
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 2.0e-41 172.6 125 70.4
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.4e-41 171.8 128 70.3
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 3.4e-41 171.8 119 68.9
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 9.9e-41 170.2 123 64.2
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 1.3e-40 169.9 119 68.1
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 6.4e-40 167.5 123 70.7
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 6.4e-40 167.5 123 70.7
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 7.1e-39 164.1 124 64.5
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 9.3e-39 163.7 127 63.0
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 4.6e-38 161.4 126 63.5
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 2.3e-37 159.1 107 75.7
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 3.0e-37 158.7 122 61.5
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 2.5e-36 155.6 104 72.1
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 2.8e-35 152.1 110 69.1
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 4.0e-34 148.3 96 76.0
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 2.6e-33 145.6 124 62.1
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 9.9e-33 143.7 83 80.7
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 1.7e-32 142.9 120 55.0
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.8e-29 132.9 125 56.8
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.6e-27 126.3 83 73.5
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 3.7e-27 125.2 94 64.9
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 5.3e-26 121.3 82 75.6
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 2.6e-25 119.0 121 57.0
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 4.5e-25 118.2 120 54.2
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 4.5e-25 118.2 127 53.5
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.3e-24 116.7 62 88.7
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 1.9e-23 112.8 119 47.9
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 2.1e-22 109.4 60 85.0
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 2.7e-22 109.0 67 77.6
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 2.7e-22 109.0 100 60.0
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.1e-21 104.8 87 59.8
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 1.6e-19 99.8 85 63.5
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 8.2e-19 97.4 94 53.2
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 1.9e-12 76.3 103 48.5
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 3.3e-12 75.5 62 61.3
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 5.3e-10 68.2 43 76.7
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 9.1e-10 67.4 39 76.9
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 2.6e-09 65.9 117 35.0
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 2.2e-08 62.8 112 34.8
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 4.2e-07 58.5 111 32.4


User provided reference genes

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