Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.0e-209 732.3 388 100.0
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 3.0e-141 505.8 378 75.7
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 5.2e-133 478.4 380 72.1
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 2.0e-132 476.5 382 73.6
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 5.0e-128 461.8 363 72.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 5.2e-117 425.2 398 63.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.6e-113 413.7 381 65.4
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.8e-110 402.9 392 64.3
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.4e-109 400.6 441 59.0
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 7.1e-106 388.3 378 62.2
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 2.1e-105 386.7 377 61.8
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 6.0e-105 385.2 399 60.2
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.3e-104 384.0 375 62.4
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 4.9e-99 365.5 370 60.8
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 5.1e-80 302.4 393 50.9
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.5e-79 300.8 383 52.7
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.1e-78 297.0 394 51.5
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 2.8e-78 296.6 394 49.7
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.1e-77 293.1 390 50.5
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.7e-75 287.3 412 49.5
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 4.9e-75 285.8 367 51.5
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 6.5e-75 285.4 408 48.0
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.5e-74 283.5 396 47.2
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 5.5e-74 282.3 405 48.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 3.9e-72 276.2 388 48.5
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 5.1e-72 275.8 386 45.6
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 4.3e-71 272.7 414 46.1
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.6e-70 270.8 381 49.6
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.1e-69 268.1 390 49.0
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 5.9e-68 262.3 379 46.7
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.7e-67 260.8 391 46.3
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 3.8e-67 259.6 381 45.4
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.2e-66 255.4 391 45.8
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.7e-65 253.4 389 45.8
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.6e-65 253.1 385 45.5
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.6e-65 252.7 385 43.9
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 7.9e-65 251.9 410 45.4
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 7.9e-65 251.9 370 46.2
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.4e-64 251.1 274 55.8
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.4e-64 251.1 382 46.3
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.0e-64 250.0 386 45.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 3.0e-64 250.0 380 48.2
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.9e-64 249.6 387 45.5
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 8.8e-64 248.4 383 43.3
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.5e-63 246.9 384 47.7
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.5e-63 246.9 368 45.9
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 4.3e-63 246.1 382 43.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 5.7e-63 245.7 418 44.0
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 5.7e-63 245.7 395 45.8
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 7.4e-63 245.4 383 46.5
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.7e-62 244.2 384 44.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.7e-62 244.2 383 46.5
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 2.2e-62 243.8 404 43.8
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 2.8e-62 243.4 391 44.5
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.2e-62 241.9 381 47.2
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.1e-61 240.0 370 43.0
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 4.1e-61 239.6 439 43.3
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 4.1e-61 239.6 385 42.9
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 6.9e-61 238.8 421 42.3
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 6.9e-61 238.8 391 45.0
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.2e-60 238.0 390 45.6
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 3.4e-60 236.5 400 45.0
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 5.9e-60 235.7 382 41.4
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 7.7e-60 235.3 380 42.6
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.0e-59 235.0 419 42.7
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.0e-59 235.0 407 42.8
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.0e-59 235.0 377 46.4
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 8.5e-59 231.9 406 42.1
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.1e-58 231.5 389 44.5
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 5.5e-58 229.2 404 42.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 7.2e-58 228.8 396 43.9
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 9.4e-58 228.4 402 44.3
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.6e-57 227.6 382 45.3
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 4.7e-57 226.1 389 43.2
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 8.8e-56 221.9 404 41.3
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.5e-55 221.1 395 43.5
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 5.7e-55 219.2 403 45.9
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.8e-54 216.9 372 43.5
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.1e-53 213.4 385 43.9
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 3.1e-53 213.4 375 42.7
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 7.0e-53 212.2 376 43.1
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 7.0e-53 212.2 384 43.0
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 9.1e-53 211.8 370 44.1
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.2e-52 211.5 407 43.5
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.0e-52 210.7 370 43.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 7.7e-52 208.8 386 42.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.7e-51 207.6 321 46.1
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.2e-51 207.2 368 44.3
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.2e-50 203.4 416 40.6
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 3.6e-49 199.9 425 40.7
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 3.0e-48 196.8 334 43.7
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 6.7e-48 195.7 327 41.3
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.3e-47 193.4 401 39.4
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.4e-47 193.0 424 40.8
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 5.7e-47 192.6 416 40.1
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 7.4e-47 192.2 384 45.3
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 7.4e-47 192.2 399 44.4
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 7.4e-47 192.2 384 45.3
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 9.7e-47 191.8 352 46.6
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.2e-46 190.7 415 40.5
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 2.2e-46 190.7 400 40.5
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.7e-46 189.9 396 41.2
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 6.3e-46 189.1 418 38.8
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 3.1e-45 186.8 386 39.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 7.0e-45 185.7 414 40.1
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 9.1e-45 185.3 395 43.0
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 9.1e-45 185.3 395 43.0
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 9.1e-45 185.3 395 43.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.6e-44 184.5 323 40.9
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.7e-43 181.0 410 39.5
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.7e-43 181.0 379 40.9
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.9e-43 180.3 403 39.5
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 6.5e-43 179.1 370 41.6
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-42 177.6 403 39.2
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.9e-42 177.6 403 39.2
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.6e-41 174.5 394 38.1
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 2.7e-41 173.7 393 41.7
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 2.7e-41 173.7 393 41.7
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 4.7e-41 172.9 371 39.4
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 5.2e-40 169.5 219 49.3
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 4.8e-38 162.9 360 38.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 8.3e-38 162.2 411 37.0
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 8.3e-38 162.2 414 34.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.4e-37 161.4 342 39.8
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.4e-37 160.6 400 36.2
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 3.1e-37 160.2 385 39.7
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 7.0e-37 159.1 172 58.1
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.2e-33 148.3 353 36.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 6.1e-33 146.0 266 43.2
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.0e-32 145.2 377 35.8
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 5.2e-32 142.9 210 46.7
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.5e-31 141.4 413 36.1
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 4.4e-31 139.8 382 36.9
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 8.3e-30 135.6 401 35.2
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.3e-27 127.5 417 33.8
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-21 108.6 246 39.4
Psat2g009520 Pisum sativum HOM05D005109 ORTHO05D006084 5.4e-21 106.3 91 61.5
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 1.0e-16 92.0 382 28.5
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.0e-15 87.8 290 36.2
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 9.8e-15 85.5 222 35.1
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 3.7e-14 83.6 177 41.2
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 8.6e-11 72.4 307 30.9


User provided reference genes

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