Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 0.0e+00 2931.0 1729 100.0
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1902.1 1646 68.2
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1878.6 1659 67.3
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 0.0e+00 1775.0 1682 63.2
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 0.0e+00 1723.4 1639 62.5
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 0.0e+00 1710.7 1630 62.7
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 0.0e+00 1696.8 1699 60.0
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 0.0e+00 1639.4 1659 60.1
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 0.0e+00 1620.1 1671 59.2
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 0.0e+00 1559.7 1653 58.1
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 0.0e+00 1395.2 1415 61.0
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1078.9 1719 45.1
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 1.3e-308 1063.9 1709 44.0
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 8.1e-303 1044.6 1698 43.5
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 2.9e-292 1009.6 1683 44.6
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.2e-285 987.6 934 60.0
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 4.8e-279 965.7 1704 41.5
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 4.8e-279 965.7 1704 41.5
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.4e-275 954.1 1709 39.8
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 1.9e-275 953.7 1754 41.1
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.8e-273 947.2 1700 42.1
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 2.8e-271 939.9 1687 43.2
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 3.8e-268 929.5 1728 39.5
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 7.9e-266 921.8 1737 40.2
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 4.4e-264 916.0 1741 39.3
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 1.7e-263 914.1 1687 39.7
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 3.1e-262 909.8 1679 40.3
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 6.9e-262 908.7 1732 39.6
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 1.5e-261 907.5 1645 40.2
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.8e-257 894.0 1782 38.5
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 6.7e-257 892.1 1766 39.5
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 3.3e-256 889.8 1698 40.0
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 6.1e-250 869.0 1732 39.3
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 1.2e-242 844.7 1678 39.9
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.8e-241 838.6 1679 39.2
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 3.5e-237 826.6 1595 40.4
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.3e-236 824.7 1659 38.5
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 6.5e-236 822.4 1794 37.8
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 9.5e-235 818.5 1786 36.5
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 2.8e-231 807.0 1826 35.5
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 3.1e-230 803.5 1731 36.2
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 4.1e-230 803.1 1737 35.8
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 1.6e-229 801.2 1698 36.9
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 2.7e-229 800.4 1653 37.4
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.1e-227 795.0 1727 36.0
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 5.6e-227 792.7 1695 36.8
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 1.0e-225 788.5 1811 36.9
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.4e-222 777.3 1680 36.2
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 3.5e-221 773.5 1738 36.8
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 3.5e-221 773.5 1745 37.0
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 5.0e-220 769.6 1662 37.8
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 1.9e-219 767.7 1827 36.9
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 5.6e-219 766.1 1693 36.1
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 7.3e-219 765.8 1684 37.6
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 9.5e-219 765.4 1761 35.5
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.6e-216 757.3 1617 37.2
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 2.0e-213 747.7 1709 35.3
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.7e-213 747.3 1772 35.9
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 7.3e-211 739.2 1612 37.5
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.2e-210 738.4 1822 35.4
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 4.9e-207 726.5 1217 41.8
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 2.7e-205 720.7 1669 35.4
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.5e-203 714.9 1641 35.6
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 2.8e-202 710.7 1722 35.8
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 2.8e-202 710.7 1739 35.0
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.8e-202 710.7 2054 31.5
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 2.6e-200 704.1 1654 35.7
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 3.0e-196 690.6 1634 35.5
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.5e-195 688.3 1657 37.3
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 6.9e-193 679.5 1716 34.7
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 2.6e-192 677.6 1136 40.1
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 4.8e-186 656.8 1619 35.5
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 2.9e-183 647.5 1695 33.6
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.9e-182 644.8 1622 35.5
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.3e-180 637.9 1561 35.2
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.4e-177 628.6 1703 36.0
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.1e-174 619.0 1661 33.0
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 2.4e-174 617.8 1632 33.5
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.9e-171 608.2 1742 33.0
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 1.8e-161 575.1 1619 32.7
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.3e-156 558.1 1682 30.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 3.4e-144 517.7 1638 30.7
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.8e-138 497.3 436 56.0
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 3.1e-129 468.0 1390 31.9
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.2e-128 466.1 1407 32.6
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.2e-128 466.1 1407 32.6
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 3.6e-117 427.9 987 37.5
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 7.8e-112 410.2 774 35.5
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.0e-108 399.8 431 48.5
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.2e-104 386.3 902 36.3
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.1e-102 379.8 884 32.8
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.5e-99 367.1 887 38.4
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 1.7e-90 339.3 241 71.8
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 2.5e-86 325.5 390 44.4
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.8e-83 314.3 900 40.2
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 1.3e-82 313.2 1010 28.0
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 5.3e-76 291.2 829 36.9
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.6e-72 279.6 902 34.7
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 4.3e-70 271.6 1683 24.7
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 9.6e-70 270.4 1682 24.9
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.4e-68 265.8 468 35.9
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.4e-68 265.8 612 32.5
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.2e-64 253.4 978 31.3
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 6.0e-64 251.1 593 31.0
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 9.6e-62 243.8 1053 26.4
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 7.9e-56 224.2 812 32.0
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 5.1e-55 221.5 254 49.2
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 4.3e-54 218.4 276 45.7
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.1e-52 213.8 232 50.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.4e-52 212.6 484 41.9
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 6.5e-50 204.5 189 56.6
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 6.0e-48 198.0 231 45.0
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.0e-47 195.7 235 51.1
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 9.0e-44 184.1 233 48.5
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 1.3e-42 180.3 182 50.0
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 8.5e-42 177.6 653 33.7
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.4e-41 174.1 146 52.1
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 5.1e-39 168.3 185 50.3
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 1.2e-35 157.1 277 44.8
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.5e-35 156.8 639 30.8
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 9.7e-30 137.5 127 55.9
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.0e-26 127.5 127 52.0
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.0e-26 127.5 1004 26.4
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.4e-25 123.6 183 42.1
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.5e-25 122.9 286 32.2
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 3.6e-24 119.0 91 61.5
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 3.9e-23 115.5 140 42.1
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 5.2e-23 115.2 471 29.3
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.5e-22 113.6 224 36.2
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 2.0e-22 113.2 414 25.8
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.8e-21 108.6 224 33.0
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 8.2e-21 107.8 643 30.3
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 5.3e-20 105.1 645 29.1
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 6.5e-18 98.2 80 62.5
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.5e-17 95.1 128 42.2
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.8e-15 90.1 152 39.5
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.0e-15 89.4 110 41.8
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 2.6e-14 86.3 68 58.8
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 7.5e-14 84.7 68 57.4
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 2.8e-13 82.8 115 50.4
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.3e-13 81.6 63 58.7
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 2.0e-11 76.6 232 26.7
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.7e-11 76.3 57 61.4
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 4.5e-11 75.5 272 34.2
Cre07.g313500 Chlamydomonas reinhardtii HOM05D051285 ORTHO05D005117 5.9e-11 75.1 410 24.4
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 2.9e-10 72.8 312 32.4
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 1.0e-07 64.3 65 47.7
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.0e-06 60.1 55 49.1


User provided reference genes

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