Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.2e-145 520.4 388 100.0
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.5e-132 476.9 389 90.2
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.7e-131 473.4 389 90.7
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 4.9e-131 471.9 389 90.5
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 6.4e-131 471.5 389 92.5
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 9.2e-130 467.6 391 92.8
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 9.2e-130 467.6 391 92.8
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.7e-120 436.8 389 87.7
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 9.5e-119 431.0 399 84.7
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.1e-117 427.6 387 87.9
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 1.8e-117 426.8 389 87.1
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 3.4e-116 422.5 404 82.9
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 7.5e-116 421.4 393 83.5
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 7.5e-116 421.4 393 83.2
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 9.9e-116 421.0 388 83.5
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 2.9e-115 419.5 393 83.7
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 4.1e-114 415.6 395 83.8
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 2.1e-113 413.3 389 82.5
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 3.5e-113 412.5 389 82.5
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.3e-112 410.6 396 83.8
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.9e-112 409.1 389 81.5
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.9e-111 406.8 392 81.4
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 7.3e-111 404.8 390 82.3
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.2e-110 404.1 388 83.2
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.6e-110 403.7 389 79.4
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.1e-110 403.3 387 83.2
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.8e-109 400.2 396 80.6
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 3.1e-109 399.4 390 76.7
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 3.1e-109 399.4 390 76.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 1.2e-108 397.5 400 81.5
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.2e-108 397.5 402 81.1
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.0e-108 396.7 406 76.8
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.4e-108 396.0 422 71.8
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 5.8e-108 395.2 396 79.8
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 7.6e-108 394.8 391 82.4
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 7.6e-108 394.8 222 88.7
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 9.9e-108 394.4 387 82.9
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.2e-107 393.3 393 76.1
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 2.2e-107 393.3 388 83.0
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.9e-107 392.9 410 79.3
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.4e-106 390.6 388 82.7
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 2.4e-106 389.8 387 72.9
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.2e-106 389.0 387 82.2
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 7.1e-106 388.3 388 78.6
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 9.2e-106 387.9 406 79.6
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 2.1e-105 386.7 222 84.7
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.7e-105 386.3 222 85.1
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 2.7e-105 386.3 388 80.4
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 3.5e-105 386.0 393 80.4
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 7.8e-105 384.8 388 79.4
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 1.0e-104 384.4 222 84.2
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 2.3e-104 383.3 387 81.1
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 2.3e-104 383.3 438 75.3
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 5.1e-104 382.1 221 85.5
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 5.1e-104 382.1 387 80.9
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 6.6e-104 381.7 395 81.3
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 8.7e-104 381.3 412 79.6
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 4.3e-103 379.0 408 75.2
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 5.6e-103 378.6 387 78.8
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 7.3e-103 378.3 222 84.7
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.6e-102 377.1 222 83.3
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 2.8e-102 376.3 222 84.2
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 2.8e-102 376.3 388 82.7
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 3.6e-102 375.9 222 82.9
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 6.2e-102 375.2 387 77.5
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 6.2e-102 375.2 222 79.7
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.1e-101 374.4 394 80.5
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 4.0e-101 372.5 387 80.1
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 9.0e-101 371.3 487 65.7
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.2e-100 370.9 224 82.1
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 1.2e-100 370.9 439 73.6
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 3.4e-100 369.4 406 64.0
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 9.9e-100 367.9 387 82.2
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.1e-98 364.4 390 80.8
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 7.1e-98 361.7 240 74.2
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.2e-97 360.9 222 79.3
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.2e-97 360.9 216 84.3
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.2e-97 360.9 216 84.3
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 2.7e-97 359.8 219 81.7
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.7e-97 359.8 221 81.0
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 2.7e-97 359.8 221 81.0
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 2.7e-97 359.8 221 81.0
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 6.0e-97 358.6 189 88.4
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 7.8e-97 358.2 189 88.4
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 2.3e-96 356.7 222 80.6
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 3.9e-96 355.9 389 78.9
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 3.9e-96 355.9 189 85.7
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 6.6e-96 355.1 189 85.2
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 1.5e-95 354.0 529 60.3
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.5e-95 354.0 189 85.2
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 5.6e-95 352.1 189 84.7
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 5.6e-95 352.1 189 84.7
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 5.6e-95 352.1 189 84.7
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.8e-94 349.7 399 78.4
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 4.8e-94 349.0 189 84.1
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 4.0e-93 345.9 398 52.5
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 5.3e-93 345.5 189 84.7
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.2e-92 344.4 189 83.6
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 1.2e-92 344.4 189 84.1
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 9.9e-92 341.3 189 83.1
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 4.9e-91 339.0 212 75.5
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.1e-90 337.8 189 82.0
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.4e-90 337.4 196 80.6
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 7.1e-90 335.1 222 75.2
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 6.0e-89 332.0 214 75.2
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.0e-88 331.3 189 80.4
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.3e-88 330.9 189 82.0
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 5.1e-88 328.9 218 72.5
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 5.1e-88 328.9 210 74.8
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 6.7e-88 328.6 394 53.3
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.9e-87 327.0 189 80.4
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 6.2e-86 322.0 167 89.8
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 3.1e-85 319.7 387 67.2
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 2.0e-84 317.0 222 76.6
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 1.7e-83 313.9 189 76.2
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.9e-83 312.4 398 50.5
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 1.5e-71 274.2 189 63.5
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 2.9e-67 260.0 386 44.0
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 9.4e-58 228.4 185 55.7
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 2.8e-54 216.9 184 54.9
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.7e-51 207.6 334 65.0
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 3.8e-51 206.5 192 52.6
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.0e-47 194.1 294 67.3
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 4.4e-47 193.0 97 91.8
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 1.8e-45 187.6 126 77.0
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.5e-42 176.0 94 86.2
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 3.8e-27 126.7 125 60.8
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.3e-26 123.6 148 47.3
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 8.9e-24 115.5 70 75.7
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 8.9e-24 115.5 70 75.7
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 1.5e-18 98.2 51 92.2
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 5.4e-13 79.7 69 60.9
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 7.0e-13 79.3 53 60.4
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 5.6e-10 69.7 42 76.2
ATR0693G087 Amborella trichopoda HOM05D005421 ORTHO05D026565 4.0e-08 63.5 55 72.7
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 5.2e-08 63.2 53 62.3
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 2.2e-06 57.8 26 100.0
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 3.7e-06 57.0 27 96.3


User provided reference genes

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