Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.7e-205 719.2 373 100.0
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.1e-191 673.3 360 97.2
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.3e-165 586.6 341 88.9
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-164 583.6 348 85.9
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.4e-164 583.2 342 88.9
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.6e-163 579.7 362 84.3
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 7.9e-163 577.4 336 87.5
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 3.9e-162 575.1 336 87.2
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 7.4e-161 570.9 344 87.5
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 3.7e-160 568.5 349 84.0
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 4.8e-160 568.2 345 84.6
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 6.9e-159 564.3 341 85.3
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.0e-157 560.5 367 81.2
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 2.3e-154 549.3 330 83.3
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.3e-154 549.3 342 81.0
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 8.8e-154 547.4 341 81.8
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 8.8e-154 547.4 329 84.2
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.5e-153 546.6 331 83.7
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 3.3e-153 545.4 335 82.4
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 4.4e-153 545.0 338 82.2
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 9.7e-153 543.9 350 79.4
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.2e-152 542.7 343 79.9
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 4.8e-152 541.6 336 81.0
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 4.8e-152 541.6 342 80.1
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 6.3e-152 541.2 344 80.5
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 6.3e-152 541.2 338 80.8
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 8.2e-152 540.8 348 79.0
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.4e-151 540.0 336 81.2
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.4e-151 539.3 344 80.2
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.4e-151 539.3 333 81.7
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 3.1e-151 538.9 329 82.7
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.1e-151 538.9 326 83.4
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.1e-151 538.9 322 85.1
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 4.1e-151 538.5 351 79.5
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 4.1e-151 538.5 332 82.8
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-151 538.1 351 79.5
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-151 538.1 351 79.5
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-151 538.1 351 79.5
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 6.9e-151 537.7 352 78.4
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 6.9e-151 537.7 322 85.1
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 6.9e-151 537.7 329 82.4
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 6.9e-151 537.7 336 80.7
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 9.1e-151 537.3 347 78.4
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-150 537.0 357 78.4
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.6e-150 535.8 338 79.6
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 3.4e-150 535.4 329 81.2
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.4e-150 535.4 331 81.3
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 4.5e-150 535.0 340 79.1
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.0e-149 533.9 338 79.3
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.0e-149 533.9 338 79.3
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-149 533.5 338 79.3
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.3e-149 533.5 342 80.4
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 2.2e-149 532.7 351 77.8
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 2.2e-149 532.7 338 79.0
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 3.8e-149 531.9 334 80.5
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 3.8e-149 531.9 339 79.9
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.8e-149 531.9 337 79.2
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 5.0e-149 531.6 354 77.1
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 5.0e-149 531.6 328 81.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 6.5e-149 531.2 340 78.5
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 6.5e-149 531.2 331 80.4
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 8.5e-149 530.8 326 81.9
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.1e-148 530.4 339 79.4
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.4e-148 530.0 336 79.5
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.9e-148 529.6 347 78.4
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.5e-148 529.3 339 79.1
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.5e-148 529.3 339 79.1
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.5e-148 529.3 376 74.5
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.2e-148 528.9 368 75.8
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 4.2e-148 528.5 348 77.6
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 4.2e-148 528.5 350 77.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 5.5e-148 528.1 343 78.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 7.2e-148 527.7 334 80.2
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 7.2e-148 527.7 331 80.7
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.1e-147 526.2 328 79.9
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.6e-147 525.4 342 78.4
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.6e-147 525.4 331 79.5
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-147 525.0 347 76.7
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 4.7e-147 525.0 347 76.7
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 4.7e-147 525.0 335 78.5
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 6.1e-147 524.6 343 77.8
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 7.9e-147 524.2 334 79.9
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 7.9e-147 524.2 330 79.4
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 7.9e-147 524.2 332 80.4
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 7.9e-147 524.2 329 80.2
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.0e-146 523.9 347 76.7
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.0e-146 523.9 325 80.6
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.4e-146 523.5 323 81.1
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 6.7e-146 521.2 361 74.8
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.5e-145 520.0 327 79.2
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.1e-143 513.8 323 80.5
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.4e-143 512.7 288 91.0
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 5.3e-143 511.5 372 72.6
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.0e-142 509.6 330 77.3
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.6e-142 509.2 332 78.0
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.0e-141 507.3 329 77.5
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.3e-141 506.9 328 79.3
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 3.8e-141 505.4 368 72.0
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.1e-140 503.8 330 77.3
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.2e-139 500.4 301 84.1
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 6.1e-139 498.0 330 78.5
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-138 497.3 354 73.2
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 4.4e-137 491.9 297 82.8
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.7e-136 490.0 323 76.8
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.1e-135 487.3 393 66.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.3e-133 480.3 337 74.2
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.6e-131 472.2 383 67.1
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 4.7e-131 471.9 356 70.8
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.4e-130 470.3 362 67.7
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 4.0e-130 468.8 333 73.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.2e-130 468.4 358 66.8
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 3.4e-129 465.7 336 72.3
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 5.7e-129 464.9 349 70.8
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.7e-125 453.4 370 63.0
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 9.5e-124 447.6 243 93.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.0e-122 442.6 339 65.2
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 6.8e-122 441.4 342 70.5
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 3.4e-121 439.1 337 66.2
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 4.4e-121 438.7 263 82.5
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.1e-119 434.1 324 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.1e-119 434.1 324 67.3
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 8.6e-117 424.5 320 67.2
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.3e-116 422.5 302 70.9
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.6e-116 421.8 366 63.7
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 4.0e-114 415.6 283 77.4
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.0e-114 415.6 271 78.2
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.1e-111 407.5 335 61.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 6.0e-110 401.7 333 60.1
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-104 384.0 331 63.4
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.7e-104 383.6 245 78.4
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.2e-103 379.4 300 63.7
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.5e-102 375.9 274 67.2
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.6e-102 375.6 337 60.8
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-101 373.6 369 56.4
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.1e-100 370.9 243 79.0
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.9e-100 370.2 240 80.4
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-99 367.1 272 71.3
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-95 354.4 246 74.4
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.4e-95 353.2 238 75.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.1e-94 350.1 365 56.2
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 6.6e-93 345.1 332 56.3
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.3e-92 342.4 238 74.4
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 8.7e-85 318.2 200 80.5
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.9e-76 290.4 203 77.3
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 7.1e-71 271.9 286 56.3
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.9e-63 247.3 254 59.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.2e-63 246.5 278 48.9
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.2e-59 232.3 161 68.3
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.0e-57 227.3 147 76.2
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.5e-55 220.3 111 97.3
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.7e-54 216.9 133 78.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.5e-47 193.7 142 69.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.6e-46 191.0 343 41.7
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 6.7e-45 185.7 233 41.2
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 8.8e-45 185.3 98 90.8
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 4.3e-44 183.0 123 74.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 7.2e-39 165.6 206 46.6
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.3e-35 152.5 103 71.8
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 2.0e-33 147.5 86 81.4
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.0e-33 147.5 110 74.5
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.5e-33 146.4 97 70.1
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.2e-32 144.1 88 78.4
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.5e-31 140.6 96 77.1
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-30 138.3 76 86.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.4e-26 124.8 189 48.1
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.8e-26 124.4 77 76.6
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.3e-19 99.4 73 60.3
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.4e-18 98.2 78 62.8
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.8e-18 97.8 54 94.4
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 2.7e-17 94.0 62 79.0
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.1e-15 88.6 73 63.0
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.5e-15 88.2 70 65.7
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 7.2e-15 85.9 78 66.7
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-07 60.8 69 53.6


User provided reference genes

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