Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 2.7e-88 329.3 267 100.0
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 5.0e-50 202.2 271 72.7
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 4.2e-49 199.1 270 73.0
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 2.7e-48 196.4 281 74.0
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 1.8e-47 193.7 269 70.3
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 7.4e-46 188.3 281 73.3
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 1.3e-45 187.6 271 71.2
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 1.4e-41 174.1 268 67.5
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 3.2e-41 172.9 237 70.0
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 2.1e-40 170.2 278 70.1
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 1.3e-37 161.0 267 44.6
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 1.3e-37 161.0 283 63.6
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 1.7e-37 160.6 282 67.0
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 3.7e-37 159.5 289 62.3
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 3.1e-36 156.4 269 51.3
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 1.2e-35 154.5 274 67.5
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 1.5e-35 154.1 277 65.7
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 2.6e-35 153.3 281 66.9
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 7.7e-35 151.8 280 66.1
PSO782G2079 Papaver somniferum HOM05D000368 ORTHO05D009348 1.3e-34 151.0 283 66.8
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 1.7e-34 150.6 277 56.7
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 3.8e-34 149.4 283 64.0
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 1.1e-33 147.9 265 67.9
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 1.1e-33 147.9 274 58.8
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 1.9e-33 147.1 274 58.8
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 2.5e-33 146.7 280 66.8
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 2.5e-33 146.7 278 63.7
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 2.5e-33 146.7 280 66.1
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 2.5e-33 146.7 282 64.5
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 2.5e-33 146.7 284 69.0
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 9.4e-33 144.8 279 63.8
Gohir.A12G257200 Gossypium hirsutum HOM05D000368 ORTHO05D009348 2.1e-32 143.7 272 60.7
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 3.6e-32 142.9 275 66.5
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 7.9e-32 141.7 253 71.5
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 7.9e-32 141.7 281 66.9
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 1.4e-31 141.0 284 62.3
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 1.4e-31 141.0 316 59.8
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 1.8e-31 140.6 275 62.2
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 3.9e-31 139.4 271 65.3
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 5.1e-31 139.0 271 65.3
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 8.8e-31 138.3 270 67.0
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 1.5e-30 137.5 282 61.0
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 2.0e-30 137.1 266 68.4
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 2.6e-30 136.7 271 64.9
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 7.4e-30 135.2 275 63.3
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 7.4e-30 135.2 280 62.5
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 1.7e-29 134.0 277 54.2
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 2.2e-29 133.7 275 65.8
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 6.3e-29 132.1 241 68.5
EL10Ac3g05631 Beta vulgaris HOM05D000368 ORTHO05D009348 1.1e-28 131.3 272 59.9
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 3.1e-28 129.8 273 62.3
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 7.0e-28 128.6 278 52.5
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 9.1e-28 128.3 270 62.6
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.6e-27 127.5 278 52.5
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 5.9e-27 125.6 279 60.9
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 2.2e-26 123.6 257 59.9
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 2.9e-26 123.2 276 58.3
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 2.9e-26 123.2 271 63.5
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 5.0e-26 122.5 273 59.3
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 5.0e-26 122.5 287 62.0
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 6.5e-26 122.1 278 56.8
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 8.5e-26 121.7 278 62.9
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 1.1e-25 121.3 273 58.2
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 1.5e-25 120.9 282 50.7
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 1.9e-25 120.6 150 74.7
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 1.9e-25 120.6 267 61.4
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 1.9e-25 120.6 280 52.5
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 3.2e-25 119.8 153 51.6
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 3.2e-25 119.8 300 49.3
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 4.2e-25 119.4 255 52.9
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 7.2e-25 118.6 273 57.9
Ah.13g068650 Amaranthus hybridus HOM05D000368 ORTHO05D009348 9.4e-25 118.2 277 53.8
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 9.4e-25 118.2 281 56.2
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.1e-24 117.1 274 56.6
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 2.7e-24 116.7 263 45.6
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 1.8e-23 114.0 149 61.7
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 2.3e-23 113.6 283 60.4
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 8.8e-23 111.7 106 62.3
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 8.8e-23 111.7 106 62.3
HPP92_018588 Vanilla planifolia HOM05D000368 ORTHO05D009348 2.0e-22 110.5 270 58.1
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 2.6e-22 110.2 97 61.9
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 2.6e-22 110.2 97 61.9
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 3.3e-22 109.8 149 63.1
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 2.8e-21 106.7 304 48.7
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 2.8e-21 106.7 270 57.8
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 8.2e-21 105.1 103 57.3
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 9.1e-20 101.7 99 58.6
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 1.2e-19 101.3 275 61.1
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 1.6e-19 100.9 98 62.2
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 1.6e-19 100.9 98 62.2
AUR62015971 Chenopodium quinoa HOM05D000368 ORTHO05D009348 1.6e-19 100.9 236 62.7
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 3.5e-19 99.8 99 54.5
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 3.5e-19 99.8 99 52.5
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 1.0e-18 98.2 99 52.5
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 1.1e-17 94.7 277 58.1
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 4.2e-17 92.8 290 57.6
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 1.2e-16 91.3 282 52.5
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 4.7e-16 89.4 99 54.5
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 7.5e-14 82.0 109 56.0
arahy.Tifrunner.gnm1.ann1.4PMG8D Arachis hypogaea HOM05D000368 ORTHO05D009348 1.3e-13 81.3 75 60.0
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 1.0e-10 71.6 189 56.6
Dinv24556 Davidia involucrata HOM05D000368 ORTHO05D009348 5.0e-10 69.3 137 68.6
arahy.Tifrunner.gnm1.ann1.QCHX4X Arachis hypogaea HOM05D000368 ORTHO05D009348 1.5e-09 67.8 57 63.2
Actinidia03122 Actinidia chinensis HOM05D000368 ORTHO05D009348 9.4e-09 65.1 54 55.6
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 1.6e-08 64.3 43 58.1
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 2.7e-08 63.5 43 58.1
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 3.6e-08 63.2 259 58.3
Nitab4.5_0001842g0090 Nicotiana tabacum HOM05D000368 ORTHO05D009348 4.7e-08 62.8 94 47.9
A10p09970 Brassica napus HOM05D000368 ORTHO05D009348 1.2e-06 58.2 33 66.7


User provided reference genes

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