Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 2.0e-115 419.1 208 100.0
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 3.7e-69 265.4 256 61.3
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 9.5e-65 250.8 181 71.8
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 1.2e-62 243.8 151 78.1
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 2.6e-62 242.7 151 78.1
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 4.4e-62 241.9 188 66.5
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 4.4e-62 241.9 258 55.4
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 7.5e-62 241.1 180 69.4
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 2.2e-61 239.6 182 66.5
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 8.3e-61 237.7 182 66.5
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 4.1e-60 235.3 181 65.7
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 9.2e-60 234.2 188 64.4
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 1.2e-59 233.8 191 66.5
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 1.2e-59 233.8 256 52.0
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 1.6e-59 233.4 188 63.8
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 1.6e-59 233.4 193 63.2
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 3.5e-59 232.3 182 67.0
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 5.9e-59 231.5 182 67.0
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 1.3e-58 230.3 188 63.3
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 2.3e-58 229.6 182 63.7
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 2.9e-58 229.2 182 63.7
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 2.9e-58 229.2 188 62.8
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 3.8e-58 228.8 193 61.7
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 5.0e-58 228.4 179 65.4
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 5.0e-58 228.4 182 63.2
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 6.6e-58 228.0 182 62.6
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 6.6e-58 228.0 181 63.0
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 8.6e-58 227.6 184 62.5
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 1.5e-57 226.9 157 70.1
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 1.9e-57 226.5 182 63.7
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 1.9e-57 226.5 185 63.2
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 2.5e-57 226.1 252 52.4
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 2.5e-57 226.1 182 62.6
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 3.3e-57 225.7 182 62.1
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 4.3e-57 225.3 182 62.1
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 4.3e-57 225.3 188 61.7
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 4.3e-57 225.3 184 63.0
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 5.6e-57 224.9 184 63.0
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 5.6e-57 224.9 185 62.7
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 7.3e-57 224.6 182 63.2
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 9.5e-57 224.2 182 62.1
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 9.5e-57 224.2 157 70.1
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 1.2e-56 223.8 182 62.6
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 1.2e-56 223.8 182 62.1
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 2.1e-56 223.0 151 70.2
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 2.1e-56 223.0 151 70.2
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 2.1e-56 223.0 190 61.1
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 3.6e-56 222.2 252 50.0
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 3.6e-56 222.2 147 71.4
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 3.6e-56 222.2 168 67.3
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 6.1e-56 221.5 147 70.1
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 6.1e-56 221.5 193 59.6
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 1.0e-55 220.7 218 57.3
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 1.4e-55 220.3 195 61.0
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 1.4e-55 220.3 182 61.0
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 1.8e-55 219.9 189 60.3
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 1.8e-55 219.9 151 68.9
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 1.8e-55 219.9 182 60.4
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 5.2e-55 218.4 179 62.0
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 5.2e-55 218.4 157 67.5
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 6.8e-55 218.0 189 59.3
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 1.2e-54 217.2 190 58.4
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 1.5e-54 216.9 183 61.2
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 1.5e-54 216.9 146 72.6
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 2.0e-54 216.5 179 62.0
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 2.6e-54 216.1 150 69.3
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 2.6e-54 216.1 183 60.7
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 7.5e-54 214.5 182 60.4
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 9.8e-54 214.2 190 59.5
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 1.3e-53 213.8 179 60.3
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 2.2e-53 213.0 182 60.4
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 3.7e-53 212.2 179 59.8
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 4.9e-53 211.8 182 59.9
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 6.4e-53 211.5 168 63.1
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 8.3e-53 211.1 190 57.9
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 1.1e-52 210.7 192 58.3
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 1.1e-52 210.7 150 67.3
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 1.4e-52 210.3 182 58.8
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 2.4e-52 209.5 253 48.2
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 2.4e-52 209.5 168 62.5
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 4.1e-52 208.8 179 59.8
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 4.1e-52 208.8 182 58.8
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 7.0e-52 208.0 179 60.3
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 9.2e-52 207.6 150 66.7
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 1.2e-51 207.2 150 68.0
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 1.6e-51 206.8 192 56.8
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 2.0e-51 206.5 150 67.3
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 2.7e-51 206.1 150 67.3
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 3.5e-51 205.7 150 66.0
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 3.5e-51 205.7 188 56.9
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 1.0e-50 204.1 183 56.3
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 2.3e-50 203.0 151 66.9
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 5.0e-50 201.8 205 53.2
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 2.5e-49 199.5 180 56.7
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 3.6e-48 195.7 178 56.2
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 4.7e-48 195.3 146 64.4
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 4.7e-48 195.3 150 60.7
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 1.1e-47 194.1 192 54.7
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 5.2e-47 191.8 178 55.1
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 1.5e-46 190.3 142 67.6
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 2.6e-46 189.5 189 53.4
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 3.4e-46 189.1 154 63.0
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 1.3e-45 187.2 187 52.4
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 1.7e-45 186.8 143 62.9
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 1.1e-44 184.1 134 65.7
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-44 183.0 152 60.5
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 9.5e-41 171.0 145 54.5
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 2.1e-40 169.9 176 52.3
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 7.5e-38 161.4 139 54.7
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 6.0e-35 151.8 144 49.3
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 7.8e-35 151.4 117 62.4
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 3.3e-33 146.0 175 46.9
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 6.2e-32 141.7 143 53.8
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 4.0e-31 139.0 182 47.3
Lalb_Chr15g0087921 Lupinus albus HOM05D005528 ORTHO05D007066 3.5e-27 125.9 82 68.3
QL10p003478 Quercus lobata HOM05D005528 ORTHO05D007066 5.6e-25 118.6 66 78.8
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 2.8e-24 116.3 123 56.1
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 2.4e-23 113.2 116 53.4
Actinidia02324 Actinidia chinensis HOM05D005528 ORTHO05D007066 1.5e-22 110.5 64 73.4
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 2.2e-21 106.7 98 58.2
ATR0390G001 Amborella trichopoda HOM05D005528 ORTHO05D007066 3.8e-21 105.9 58 79.3
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 7.3e-17 91.7 80 61.2
Glyma.07G264900 Glycine max HOM05D005528 ORTHO05D007066 1.1e-15 87.8 149 40.3
Haze_06901 Corylus avellana HOM05D005528 ORTHO05D007066 2.6e-14 83.2 92 51.1
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 3.4e-14 82.8 68 61.8
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 1.7e-13 80.5 107 41.1
Cre03.g164350 Chlamydomonas reinhardtii HOM05D001262 ORTHO05D001114 1.9e-12 77.0 174 33.3
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 1.9e-12 77.0 137 32.8
MD10G1329700 Malus domestica HOM05D005528 ORTHO05D007066 1.6e-11 73.9 123 34.1
Thhalv10011887m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 1.1e-09 67.8 47 66.0
PRCOL_00004932 Prasinoderma coloniale HOM05D005528 ORTHO05D001114 3.3e-09 66.2 179 30.2
QL03p008473 Quercus lobata HOM05D005528 ORTHO05D007066 3.3e-09 66.2 40 67.5
MCO05G361 Micromonas commoda HOM05D001262 ORTHO05D001114 4.3e-09 65.9 149 28.9
AT1G18773 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 3.1e-07 59.7 52 51.9
MCO05G339 Micromonas commoda HOM05D005528 ORTHO05D007066 1.2e-06 57.8 129 30.2
MELO3C007429.2 Cucumis melo HOM05D005528 ORTHO05D007066 5.8e-06 55.5 77 41.6
DCAR_009207 Daucus carota HOM05D001262 ORTHO05D001114 7.6e-06 55.1 86 33.7
MCO13G631 Micromonas commoda HOM05D005528 ORTHO05D007066 7.6e-06 55.1 150 28.0


User provided reference genes

Program Settings