Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 1.6e-82 309.3 147 100.0
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 6.1e-58 227.6 143 81.8
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 6.3e-47 191.0 144 68.1
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 2.4e-46 189.1 144 68.1
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 7.0e-46 187.6 141 69.5
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 7.2e-43 177.6 143 68.5
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 2.6e-40 169.1 146 67.8
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 5.3e-38 161.4 152 55.9
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 1.1e-35 153.7 106 71.7
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 6.7e-33 144.4 116 62.1
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 3.7e-31 138.7 140 52.9
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 9.1e-30 134.0 119 58.0
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 9.1e-30 134.0 119 58.0
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 7.7e-29 131.0 149 51.7
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.3e-28 130.2 111 60.4
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.1e-27 127.1 141 49.6
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 1.1e-27 127.1 141 49.6
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 2.5e-27 125.9 141 48.9
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 4.2e-27 125.2 141 51.8
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 2.1e-26 122.9 142 45.8
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 6.1e-26 121.3 141 46.1
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 8.0e-26 120.9 86 62.8
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 8.0e-26 120.9 142 45.8
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 6.8e-25 117.9 85 62.4
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 2.0e-24 116.3 140 47.1
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 2.6e-24 115.9 88 63.6
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 5.7e-24 114.8 140 45.0
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.7e-23 113.2 87 63.2
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.7e-23 113.2 86 60.5
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.8e-23 112.5 86 60.5
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 3.7e-23 112.1 97 57.7
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 3.7e-23 112.1 86 57.0
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 6.3e-23 111.3 140 43.6
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.1e-22 110.5 86 59.3
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 1.1e-22 110.5 96 57.3
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 4.1e-22 108.6 87 59.8
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 4.1e-22 108.6 87 56.3
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 4.1e-22 108.6 86 57.0
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 5.4e-22 108.2 86 60.5
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.2e-21 107.1 87 58.6
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.2e-21 107.1 87 59.8
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.2e-21 107.1 87 58.6
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 1.6e-21 106.7 99 50.5
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 2.0e-21 106.3 87 58.6
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 3.5e-21 105.5 118 48.3
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 3.5e-21 105.5 136 42.6
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 3.5e-21 105.5 123 45.5
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 4.5e-21 105.1 89 55.1
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 5.9e-21 104.8 115 47.8
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.0e-20 104.0 86 55.8
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 1.7e-20 103.2 89 53.9
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 2.3e-20 102.8 97 51.5
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.9e-20 102.4 87 55.2
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 2.9e-20 102.4 138 42.8
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 2.9e-20 102.4 106 48.1
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 3.8e-20 102.1 139 41.7
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 5.0e-20 101.7 106 46.2
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 6.6e-20 101.3 116 46.6
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 6.6e-20 101.3 112 47.3
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 1.9e-19 99.8 106 45.3
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 2.5e-19 99.4 87 52.9
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 4.2e-19 98.6 89 53.9
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 7.2e-19 97.8 138 38.4
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 7.2e-19 97.8 86 52.3
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 9.5e-19 97.4 87 54.0
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 9.5e-19 97.4 81 56.8
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.1e-18 96.3 87 51.7
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 2.8e-18 95.9 112 46.4
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 6.1e-18 94.7 98 49.0
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 8.0e-18 94.4 83 53.0
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 1.0e-17 94.0 85 49.4
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 4.0e-17 92.0 87 49.4
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 8.9e-17 90.9 83 55.4
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 8.9e-17 90.9 83 55.4
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-16 90.5 117 41.9
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 3.4e-16 89.0 110 45.5
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 4.4e-16 88.6 117 41.9
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 4.4e-16 88.6 87 49.4
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 7.5e-16 87.8 82 51.2
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 7.5e-16 87.8 112 43.8
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 9.8e-16 87.4 84 50.0
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 9.8e-16 87.4 88 46.6
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 1.7e-15 86.7 117 41.0
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 2.2e-15 86.3 117 41.9
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 3.7e-15 85.5 88 47.7
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 4.9e-15 85.1 117 39.3
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 4.9e-15 85.1 117 39.3
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 6.3e-15 84.7 87 43.7
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 6.3e-15 84.7 87 43.7
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 8.3e-15 84.3 88 46.6
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 1.8e-14 83.2 88 46.6
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 2.0e-13 79.7 86 45.3
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 5.9e-13 78.2 86 45.3
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.6e-10 70.1 85 38.8
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 4.0e-09 65.5 73 43.8
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 1.2e-08 63.9 90 34.4
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.0e-08 63.2 86 40.7
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 6.4e-07 58.2 34 73.5


User provided reference genes

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