Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 8.7e-79 297.0 157 100.0
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.7e-74 282.7 156 92.3
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.7e-74 282.7 156 92.9
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.7e-74 282.7 156 92.9
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 4.9e-74 281.2 156 91.7
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 4.9e-74 281.2 157 92.4
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 7.1e-73 277.3 156 91.0
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 7.1e-73 277.3 156 91.0
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 9.3e-73 276.9 156 91.0
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.7e-72 275.4 157 90.4
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 3.0e-71 271.9 156 88.5
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.5e-70 269.6 154 90.9
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 3.1e-68 261.9 156 85.9
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 9.0e-68 260.4 152 86.8
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 4.5e-67 258.1 152 86.2
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 5.8e-67 257.7 156 84.0
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.4e-65 253.1 156 84.0
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.9e-65 252.7 156 83.3
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 3.2e-65 251.9 156 82.7
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 5.5e-65 251.1 156 82.1
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 7.1e-65 250.8 156 84.6
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 9.3e-65 250.4 142 90.1
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.1e-64 249.2 156 82.1
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 4.6e-64 248.1 156 80.1
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 6.0e-64 247.7 156 80.8
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.0e-63 246.9 147 85.7
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 5.1e-63 244.6 156 81.4
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 6.7e-63 244.2 156 82.1
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.1e-62 243.4 156 80.8
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.1e-62 243.4 156 80.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.9e-62 242.7 156 82.1
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 5.7e-62 241.1 154 83.1
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.8e-61 238.8 154 81.2
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.8e-61 238.8 154 78.6
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.7e-61 238.4 154 81.2
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 6.3e-61 237.7 154 80.5
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.1e-60 236.9 157 79.0
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.5e-59 233.0 157 79.0
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 5.9e-59 231.1 158 79.7
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.7e-58 229.6 146 79.5
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.9e-58 228.8 157 77.1
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.8e-58 228.4 157 77.1
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.8e-58 228.4 157 77.1
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 8.5e-58 227.3 171 73.7
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 1.4e-57 226.5 152 80.3
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.9e-57 226.1 154 76.0
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 4.6e-56 221.5 154 74.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 3.0e-55 218.8 154 73.4
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 3.9e-55 218.4 154 76.6
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 6.7e-55 217.6 198 63.1
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 3.3e-54 215.3 154 75.3
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 7.4e-54 214.2 154 74.0
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 9.7e-54 213.8 156 71.8
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.3e-53 213.4 154 74.0
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.3e-53 213.4 154 74.0
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.6e-53 213.0 152 73.7
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 6.3e-53 211.1 221 55.2
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 8.2e-53 210.7 154 73.4
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 8.2e-53 210.7 154 73.4
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.1e-52 210.3 155 74.2
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.8e-52 209.5 183 65.0
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.1e-52 208.8 128 82.8
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.1e-52 208.8 154 72.7
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.9e-52 207.6 154 72.1
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 9.1e-52 207.2 154 70.1
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 9.1e-52 207.2 154 72.1
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.2e-51 206.8 154 74.0
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 2.6e-51 205.7 154 69.5
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 5.9e-51 204.5 154 68.8
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 5.9e-51 204.5 154 71.4
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.7e-51 204.1 154 70.8
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.7e-51 204.1 154 70.8
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.3e-50 203.4 154 68.8
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.9e-50 202.2 154 68.2
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.8e-50 201.8 154 72.7
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.5e-50 201.1 154 70.1
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 8.5e-50 200.7 156 71.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.1e-49 200.3 152 71.1
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.9e-49 199.5 154 72.7
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.2e-49 198.7 156 71.2
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 7.2e-49 197.6 150 72.7
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 9.4e-49 197.2 154 71.4
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 9.4e-49 197.2 154 72.1
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.2e-48 196.8 150 69.3
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-48 196.8 154 72.1
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.0e-47 193.7 155 66.5
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.8e-47 193.0 147 72.1
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.8e-47 193.0 154 67.5
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.3e-47 192.6 151 66.9
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 5.1e-47 191.4 154 70.1
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 5.1e-47 191.4 159 64.8
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.8e-47 190.7 155 65.8
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.8e-47 190.7 149 71.1
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.1e-46 190.3 156 64.1
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 3.3e-46 188.7 154 63.6
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 3.3e-46 188.7 155 65.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 5.7e-46 188.0 154 69.5
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 9.7e-46 187.2 155 65.8
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.7e-45 186.4 154 65.6
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.7e-45 186.4 154 65.6
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.7e-45 186.4 155 64.5
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.7e-45 186.4 154 66.2
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 2.2e-45 186.0 155 65.2
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.7e-45 185.3 154 65.6
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.7e-45 185.3 159 65.4
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.8e-44 183.0 123 78.0
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 2.4e-44 182.6 268 45.9
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.9e-44 181.0 157 66.2
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 2.0e-43 179.5 125 75.2
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.4e-43 178.7 154 59.7
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.0e-42 177.2 154 60.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.7e-42 176.4 184 57.1
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 5.0e-42 174.9 154 61.0
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 8.5e-42 174.1 165 63.0
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.4e-41 173.3 155 64.5
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 9.4e-41 170.6 143 66.4
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 9.4e-41 170.6 143 66.4
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.6e-40 168.7 133 69.2
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.8e-39 166.4 148 60.8
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.0e-39 165.6 97 85.6
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 3.9e-39 165.2 114 72.8
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.6e-38 162.5 154 60.4
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 5.7e-38 161.4 152 57.9
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 5.7e-38 161.4 155 60.6
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 9.7e-38 160.6 158 60.1
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.7e-38 160.6 152 57.9
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.7e-37 159.8 154 59.1
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.7e-37 159.8 154 59.1
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.7e-37 159.8 154 59.1
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.7e-37 159.8 121 71.1
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 2.2e-37 159.5 176 55.7
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.8e-37 159.1 164 57.9
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.8e-37 159.1 93 82.8
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 3.7e-37 158.7 140 62.1
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 4.8e-37 158.3 152 56.6
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 8.2e-37 157.5 155 58.1
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.8e-36 156.4 153 56.9
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-36 156.0 95 85.3
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 4.1e-36 155.2 154 57.1
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 4.1e-36 155.2 149 55.7
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 5.3e-36 154.8 93 80.6
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.0e-35 152.9 156 53.8
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 3.5e-35 152.1 119 72.3
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.0e-34 150.6 113 68.1
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.3e-34 150.2 98 77.6
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.5e-34 147.9 119 67.2
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.2e-33 145.6 153 55.6
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.2e-33 144.4 176 50.6
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.7e-32 142.5 143 58.0
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 3.6e-32 142.1 96 74.0
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 5.2e-31 138.3 102 67.6
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 8.8e-31 137.5 157 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.4e-30 135.2 143 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 5.7e-30 134.8 143 55.9
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 4.8e-29 131.7 93 73.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 8.2e-29 131.0 156 53.8
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.1e-28 130.6 122 56.6
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 2.4e-28 129.4 154 48.7
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.0e-28 127.9 94 69.1
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 3.5e-27 125.6 149 53.7
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.0e-26 124.0 168 46.4
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.5e-26 121.3 92 66.3
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 5.4e-20 101.7 84 67.9
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.0e-19 99.8 91 64.8
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 2.7e-19 99.4 84 67.9
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 2.3e-18 96.3 71 64.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.3e-17 92.4 91 58.2
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 9.5e-17 90.9 83 51.8
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.8e-15 86.7 61 70.5
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 3.0e-15 85.9 88 55.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 8.3e-13 77.8 46 78.3
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.2e-12 74.3 58 60.3
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.5e-11 72.4 58 60.3
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.5e-11 72.0 66 51.5
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 4.3e-09 65.5 86 43.0
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 9.5e-09 64.3 41 75.6
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 4.7e-08 62.0 61 59.0
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.0e-07 60.8 76 44.7
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.2e-07 58.5 92 43.5
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 2.6e-06 56.2 36 77.8
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 9.8e-06 54.3 88 44.3


User provided reference genes

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