Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 0.0e+00 1209.1 593 100.0
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 0.0e+00 1077.4 594 88.2
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 3.8e-308 1060.8 595 86.7
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 1.7e-300 1035.4 596 85.2
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 2.1e-298 1028.5 593 85.3
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 4.6e-298 1027.3 581 85.9
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 3.9e-297 1024.2 593 84.3
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.1e-296 1022.7 592 84.3
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 7.3e-296 1020.0 593 83.8
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 6.9e-294 1013.4 593 83.3
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 8.1e-279 963.4 593 78.8
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 9.0e-278 959.9 594 78.3
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 2.7e-274 948.3 594 76.9
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.0e-273 946.4 596 76.3
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 1.1e-272 943.0 597 77.1
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 9.6e-272 939.9 594 77.1
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 5.3e-270 934.1 594 76.8
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 9.0e-270 933.3 594 76.1
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.2e-269 932.9 597 76.4
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.3e-268 929.5 594 76.9
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 2.9e-268 928.3 593 75.4
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 2.9e-268 928.3 594 75.8
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 3.8e-268 927.9 594 76.1
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 1.4e-267 926.0 598 76.6
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 1.2e-266 922.9 594 75.4
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 3.0e-265 918.3 593 78.1
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 5.1e-265 917.5 593 76.1
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 8.7e-265 916.8 594 75.8
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 4.3e-264 914.4 594 74.9
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 8.2e-263 910.2 631 72.3
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 1.8e-262 909.1 594 74.4
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 6.9e-262 907.1 594 74.6
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 3.8e-260 901.4 594 75.1
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 6.5e-260 900.6 597 73.7
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 1.2e-258 896.3 633 70.3
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 1.2e-258 896.3 670 68.4
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 2.7e-258 895.2 602 73.3
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.4e-251 872.8 603 70.8
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 1.4e-251 872.8 634 69.6
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 1.2e-250 869.8 599 70.6
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 3.6e-250 868.2 596 71.8
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 3.6e-250 868.2 595 71.3
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 2.3e-249 865.5 595 71.1
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 5.2e-249 864.4 616 69.2
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.5e-248 862.8 597 70.5
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 3.3e-248 861.7 593 69.8
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.3e-247 859.8 596 71.1
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 1.4e-246 856.3 555 76.4
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 3.1e-246 855.1 596 71.1
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 3.1e-246 855.1 596 70.6
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 2.6e-245 852.0 596 70.8
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.5e-243 845.5 485 85.8
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 2.2e-239 832.4 548 76.1
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 1.6e-237 826.2 597 69.8
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 2.7e-237 825.5 591 69.9
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 2.9e-236 822.0 599 69.4
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 5.5e-235 817.8 596 68.8
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 5.5e-235 817.8 596 69.0
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 4.0e-233 811.6 594 66.0
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 2.0e-232 809.3 647 64.6
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 2.8e-231 805.4 570 68.6
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 9.1e-230 800.4 595 65.9
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 2.0e-229 799.3 535 73.3
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 2.3e-228 795.8 597 65.3
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 9.5e-227 790.4 597 66.3
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 1.6e-226 789.6 586 68.3
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 2.8e-226 788.9 597 67.5
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 6.1e-226 787.7 601 66.2
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 2.6e-224 782.3 547 70.4
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 2.8e-223 778.9 596 64.1
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 4.3e-219 765.0 653 61.7
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 9.5e-219 763.8 596 63.1
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 3.6e-218 761.9 600 65.3
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 2.3e-217 759.2 577 66.4
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 1.2e-216 756.9 519 72.6
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 3.4e-216 755.4 593 63.2
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 4.4e-216 755.0 595 62.4
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 7.5e-216 754.2 611 64.6
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 9.8e-216 753.8 594 62.8
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 9.8e-216 753.8 593 65.4
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 3.2e-214 748.8 688 58.0
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 4.6e-213 745.0 531 68.5
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.9e-211 739.6 597 61.8
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 3.3e-211 738.8 594 62.8
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 4.3e-211 738.4 529 69.0
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 5.6e-211 738.0 599 61.6
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 5.6e-211 738.0 617 61.1
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 2.8e-210 735.7 597 61.6
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 8.9e-209 730.7 601 60.4
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 2.0e-208 729.6 599 61.1
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 5.8e-208 728.0 511 69.7
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 7.5e-208 727.6 598 61.0
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.3e-204 716.8 573 64.6
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 9.5e-203 710.7 596 59.9
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 4.9e-199 698.4 556 62.4
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 3.5e-189 665.6 380 85.8
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 6.9e-161 571.6 531 56.3
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.7e-138 496.1 390 62.8
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 6.3e-138 495.4 609 46.8
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 3.6e-125 453.0 433 54.0
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 6.5e-119 432.2 529 49.0
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 5.5e-118 429.1 602 40.7
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.8e-100 370.9 246 72.0
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 8.1e-85 318.9 206 76.2
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 1.4e-81 308.1 252 58.3
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 3.2e-81 307.0 286 55.2
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-68 264.2 625 31.4
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.0e-59 234.6 168 66.1
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 6.9e-44 183.0 158 59.5
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.3e-38 164.1 138 58.0
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 2.9e-34 151.0 121 58.7
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 4.6e-32 143.7 110 69.1
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 4.6e-32 143.7 81 80.2
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 5.7e-22 110.2 69 71.0
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 1.6e-16 92.0 83 56.6
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 8.0e-16 89.7 315 25.4
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 8.8e-15 86.3 60 73.3
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 2.2e-10 71.6 44 68.2
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 3.8e-10 70.9 63 55.6
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 9.4e-09 66.2 62 58.1
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.2e-08 65.9 55 56.4
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 1.6e-08 65.5 32 93.8
Lsat_1_v5_gn_2_94360 Lactuca sativa HOM05D000173 ORTHO05D006747 8.0e-08 63.2 417 19.7
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 5.2e-07 60.5 32 84.4
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 6.8e-07 60.1 496 22.8
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 8.8e-07 59.7 365 24.7
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 1.5e-06 58.9 390 23.3
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.5e-06 58.9 366 23.8
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 1.5e-06 58.9 493 22.3
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 1.5e-06 58.9 363 24.8
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 2.0e-06 58.5 366 23.8
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 2.0e-06 58.5 447 23.3
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 2.0e-06 58.5 66 45.5
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 4.4e-06 57.4 433 22.6
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 4.4e-06 57.4 489 22.9
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 4.4e-06 57.4 362 24.0
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 4.4e-06 57.4 493 21.7
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 4.4e-06 57.4 381 24.1
Rhsim08G0041400 Rhododendron simsii HOM05D000173 ORTHO05D006747 5.7e-06 57.0 423 20.3
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 5.7e-06 57.0 492 22.8
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 7.5e-06 56.6 367 23.2
FAN09G0876 Fragaria x ananassa HOM05D000173 ORTHO05D006747 7.5e-06 56.6 437 20.4
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 7.5e-06 56.6 363 24.0
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 9.7e-06 56.2 365 23.6
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 9.7e-06 56.2 494 22.7


User provided reference genes

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