Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.1e-193 679.9 348 100.0
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 2.2e-135 486.1 355 75.2
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 2.7e-133 479.2 356 73.9
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.8e-129 466.5 348 73.3
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 2.0e-128 463.0 355 73.2
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 5.9e-120 434.9 350 67.4
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 7.2e-118 427.9 342 67.8
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 8.0e-117 424.5 343 66.2
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 3.1e-113 412.5 344 66.9
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 2.0e-112 409.8 260 80.8
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 8.0e-109 397.9 253 80.6
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 9.2e-97 357.8 281 67.6
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 2.7e-96 356.3 238 74.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 6.0e-96 355.1 259 71.8
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 7.8e-96 354.8 258 70.5
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 1.7e-95 353.6 265 70.6
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 8.6e-95 351.3 241 75.5
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.1e-94 350.9 238 74.8
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.5e-94 350.5 259 71.8
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.5e-94 350.5 259 71.8
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 2.5e-94 349.7 252 71.4
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 4.3e-94 349.0 252 71.0
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 5.6e-94 348.6 234 73.9
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 4.7e-93 345.5 219 79.5
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 8.1e-93 344.7 270 65.9
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.1e-92 344.4 236 75.0
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.4e-92 344.0 232 73.3
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.8e-92 343.6 258 70.2
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.3e-92 343.2 251 70.1
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.3e-92 343.2 220 79.1
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.0e-92 342.4 293 62.8
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 4.0e-92 342.4 236 73.3
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 4.0e-92 342.4 236 72.9
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 5.2e-92 342.0 224 76.8
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 6.8e-92 341.7 269 69.1
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 7.5e-91 338.2 228 73.7
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.5e-91 338.2 228 73.7
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 9.8e-91 337.8 218 78.4
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 2.2e-90 336.7 253 70.0
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.9e-90 336.3 232 72.4
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 6.4e-90 335.1 232 72.4
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 6.4e-90 335.1 224 74.6
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 8.3e-90 334.7 250 70.8
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.4e-89 334.0 218 76.1
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 4.1e-89 332.4 238 71.4
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 5.4e-89 332.0 224 75.9
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 5.4e-89 332.0 281 64.1
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 7.1e-89 331.6 219 75.8
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 7.1e-89 331.6 208 78.8
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 9.2e-89 331.3 246 70.7
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.2e-88 330.9 248 68.1
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.2e-88 330.9 278 65.1
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.2e-88 330.9 213 78.9
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 1.6e-88 330.5 226 75.2
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 2.1e-88 330.1 260 69.6
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.1e-88 330.1 347 54.8
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 2.7e-88 329.7 259 69.5
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 2.7e-88 329.7 215 78.1
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 2.7e-88 329.7 215 78.1
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.5e-88 329.3 232 71.6
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 4.6e-88 328.9 203 81.3
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 6.0e-88 328.6 220 73.6
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 6.0e-88 328.6 223 74.0
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 6.0e-88 328.6 250 68.0
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.3e-87 327.4 215 77.7
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.7e-87 327.0 215 78.1
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 3.0e-87 326.2 217 76.0
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 3.0e-87 326.2 217 76.0
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 3.0e-87 326.2 222 75.7
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 5.1e-87 325.5 215 77.2
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 1.5e-86 323.9 222 75.2
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 3.3e-86 322.8 339 55.8
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 4.3e-86 322.4 223 74.4
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 4.3e-86 322.4 222 74.8
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 5.6e-86 322.0 220 75.0
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 7.3e-86 321.6 222 74.3
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 9.5e-86 321.2 208 76.0
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.1e-85 320.1 233 71.2
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.1e-85 320.1 252 66.7
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 3.6e-85 319.3 222 74.3
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 3.6e-85 319.3 224 73.2
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 4.7e-85 318.9 220 74.5
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 8.1e-85 318.2 220 73.6
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 8.1e-85 318.2 222 74.3
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.1e-84 317.8 220 75.0
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.1e-84 317.8 289 60.9
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 1.8e-84 317.0 222 73.4
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.8e-84 317.0 222 73.9
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 2.3e-84 316.6 217 75.6
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 4.0e-84 315.8 222 73.4
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 6.8e-84 315.1 222 73.0
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 2.0e-83 313.5 267 64.4
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 3.4e-83 312.8 208 76.0
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 5.8e-83 312.0 207 76.8
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 7.6e-83 311.6 223 72.6
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.3e-82 310.8 219 69.4
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 4.9e-82 308.9 224 71.4
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.2e-81 306.2 220 71.8
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 3.0e-79 299.7 223 70.4
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 1.1e-78 297.7 203 72.9
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 2.5e-78 296.6 202 75.2
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 5.6e-78 295.4 343 52.5
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.6e-77 293.9 191 75.9
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 6.2e-77 292.0 164 87.2
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 3.3e-70 269.6 216 60.2
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 9.6e-70 268.1 193 71.0
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 6.4e-66 255.4 202 67.8
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 8.4e-66 255.0 144 86.8
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.1e-65 254.6 220 63.6
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 7.9e-64 248.4 210 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.8e-60 237.3 188 62.2
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.2e-59 234.6 205 58.0
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.7e-50 204.1 214 50.9
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.7e-50 204.1 159 62.3
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.3e-47 194.5 206 47.1
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.3e-47 193.7 203 50.7
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 2.4e-44 183.7 175 50.3
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 6.5e-42 175.6 193 48.2
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 7.4e-38 162.2 110 77.3
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 6.3e-37 159.1 142 60.6
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 7.2e-33 145.6 157 54.1
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.6e-32 144.4 94 78.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 9.4e-25 118.6 143 40.6
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 6.3e-21 105.9 65 81.5
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 2.3e-15 87.4 91 58.2
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.5e-14 84.7 53 79.2


User provided reference genes

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