Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.5e-80 302.8 150 100.0
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 3.6e-58 228.4 149 71.1
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 5.8e-56 221.1 149 68.5
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.2e-55 219.2 145 69.7
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.4e-54 215.7 145 70.3
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.4e-54 214.5 145 68.3
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 7.1e-54 214.2 149 66.4
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.2e-53 213.4 149 66.4
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.6e-53 213.0 149 68.5
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.1e-53 212.6 146 67.1
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.7e-53 212.2 145 67.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 3.5e-53 211.8 146 66.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.0e-52 208.8 148 66.2
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.9e-51 206.1 146 65.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.9e-51 206.1 145 69.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.9e-51 206.1 144 65.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.2e-50 203.4 149 63.1
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.2e-50 203.4 149 64.4
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.1e-50 202.6 146 63.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.8e-50 202.2 144 65.3
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.6e-50 201.8 150 62.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 3.6e-50 201.8 145 68.3
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.6e-50 201.8 143 66.4
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 6.2e-50 201.1 145 66.9
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 6.2e-50 201.1 145 67.6
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 6.2e-50 201.1 149 63.8
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 6.2e-50 201.1 149 63.1
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 8.1e-50 200.7 148 66.2
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 8.1e-50 200.7 149 62.4
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.4e-49 199.9 149 64.4
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.8e-49 199.5 149 62.4
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.4e-49 199.1 149 63.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.1e-49 198.7 149 61.7
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.1e-49 198.7 144 64.6
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.1e-49 198.7 149 62.4
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 4.0e-49 198.4 149 61.7
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 4.0e-49 198.4 144 64.6
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.9e-49 197.6 146 65.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 9.0e-49 197.2 142 66.9
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 9.0e-49 197.2 145 62.1
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.2e-48 196.8 146 61.6
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.5e-48 196.4 150 62.7
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.5e-48 196.4 145 62.1
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.0e-48 196.1 145 61.4
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.0e-48 196.1 145 61.4
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.6e-48 195.7 143 64.3
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 3.4e-48 195.3 147 60.5
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 4.4e-48 194.9 145 63.4
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 5.8e-48 194.5 147 60.5
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.9e-48 193.7 145 64.8
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 9.9e-48 193.7 147 61.2
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.2e-47 192.6 145 64.1
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.2e-47 192.6 149 61.1
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.2e-47 192.6 150 61.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 3.8e-47 191.8 149 59.7
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.8e-47 191.8 146 59.6
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 6.4e-47 191.0 149 62.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.4e-46 189.9 149 61.1
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.9e-46 189.5 149 61.1
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.4e-46 189.1 144 60.4
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.4e-46 189.1 143 57.3
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.2e-46 188.3 148 61.5
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.1e-46 187.6 149 59.7
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.1e-46 187.6 150 60.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.1e-46 187.6 146 62.3
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 9.3e-46 187.2 149 60.4
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 9.3e-46 187.2 147 59.9
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 9.3e-46 187.2 149 60.4
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 9.3e-46 187.2 146 54.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 9.3e-46 187.2 146 54.1
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.2e-45 186.8 144 59.7
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.2e-45 186.8 147 59.2
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 1.2e-45 186.8 146 59.6
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.6e-45 186.4 148 61.5
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.6e-45 186.4 149 59.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-45 186.4 146 61.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.6e-45 186.4 149 61.7
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.1e-45 186.0 147 59.2
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.7e-45 185.7 149 59.7
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.7e-45 185.7 143 62.2
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.7e-45 185.7 143 62.2
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 3.5e-45 185.3 147 59.9
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.6e-45 184.9 143 55.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 6.0e-45 184.5 147 59.9
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 7.8e-45 184.1 145 58.6
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.0e-44 183.7 146 57.5
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.7e-44 183.0 149 59.7
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.7e-44 183.0 147 55.1
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.7e-44 183.0 147 57.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.7e-44 183.0 147 57.1
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.9e-44 181.8 147 56.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 5.1e-44 181.4 144 59.7
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 5.1e-44 181.4 125 66.4
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.1e-44 181.4 143 60.8
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 8.7e-44 180.6 150 58.7
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 8.7e-44 180.6 147 55.8
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 8.7e-44 180.6 145 57.9
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.5e-43 179.9 144 55.6
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.5e-43 179.9 144 55.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-43 179.9 143 53.1
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.5e-43 179.1 144 56.9
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 4.3e-43 178.3 150 58.0
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.3e-43 178.3 144 56.9
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 5.6e-43 177.9 149 56.4
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 5.6e-43 177.9 150 58.7
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.3e-43 177.6 144 59.0
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.3e-43 177.6 144 59.0
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 7.3e-43 177.6 144 55.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 7.3e-43 177.6 144 55.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 7.3e-43 177.6 149 59.7
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 9.6e-43 177.2 149 55.0
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 9.6e-43 177.2 150 58.7
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 9.6e-43 177.2 140 60.7
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-42 176.4 150 58.0
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.8e-42 175.6 150 58.7
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.6e-42 175.3 150 58.0
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 4.8e-42 174.9 148 56.1
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 4.8e-42 174.9 149 59.1
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 6.2e-42 174.5 146 60.3
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 8.1e-42 174.1 146 56.2
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 8.1e-42 174.1 149 55.7
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.4e-41 173.3 143 58.7
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-41 172.6 150 57.3
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.4e-41 172.6 161 53.4
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.1e-41 172.2 150 54.7
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 3.1e-41 172.2 150 58.0
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.0e-41 171.8 150 54.0
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 9.0e-41 170.6 144 56.2
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.5e-40 169.9 150 54.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.0e-40 169.5 128 62.5
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.0e-40 169.5 144 58.3
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.6e-40 169.1 146 54.1
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.6e-40 169.1 144 56.2
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 3.4e-40 168.7 144 54.9
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.8e-40 167.9 143 53.8
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.7e-39 166.4 151 54.3
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 7.1e-38 161.0 145 54.5
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.3e-38 160.6 145 54.5
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.2e-37 160.2 140 54.3
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.6e-37 159.8 145 50.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 6.0e-37 157.9 146 52.1
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.1e-36 154.8 147 51.7
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 6.7e-36 154.5 144 50.7
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.5e-35 152.5 144 50.7
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.3e-35 151.8 145 49.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 5.6e-35 151.4 145 51.0
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 6.9e-33 144.4 132 53.0
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.4e-32 142.1 144 49.3
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.1e-30 134.4 150 46.7
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.6e-29 133.3 146 46.6
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 4.6e-29 131.7 146 46.6
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.0e-29 131.3 115 53.9
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.3e-28 130.2 126 51.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.8e-28 129.8 149 44.3
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.0e-28 129.0 149 43.6
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.5e-27 126.7 148 48.0
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 5.6e-27 124.8 94 58.5
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.6e-27 124.8 146 43.2
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.8e-26 122.5 110 50.0
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.8e-26 122.5 112 55.4
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.0e-23 114.0 83 61.4
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 7.1e-22 107.8 83 57.8
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.1e-19 100.5 108 47.2
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.0e-16 89.7 77 54.5
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 4.5e-16 88.6 84 53.6
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 5.9e-16 88.2 84 53.6
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.2e-15 86.3 146 38.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.2e-13 80.5 100 41.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-13 80.1 63 55.6
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 5.1e-12 75.1 174 29.3
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.8e-10 69.3 140 32.1
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 9.1e-09 64.3 43 67.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 5.0e-07 58.5 149 29.5


User provided reference genes

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