Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 0.0e+00 1236.1 600 100.0
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.7e-300 1035.4 598 84.3
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.9e-299 1031.9 598 84.4
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 3.6e-298 1027.7 594 83.8
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 3.9e-297 1024.2 603 83.4
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 9.7e-296 1019.6 600 82.8
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 9.7e-296 1019.6 600 82.5
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 7.7e-293 1010.0 596 82.2
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.3e-292 1009.2 586 83.4
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 3.8e-292 1007.7 601 81.5
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 3.8e-292 1007.7 600 82.0
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.1e-291 1006.1 600 81.8
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 2.5e-291 1005.0 601 81.5
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 3.2e-291 1004.6 603 80.9
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-290 1001.9 594 81.0
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-290 1001.5 594 81.0
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.6e-290 1001.1 601 81.2
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 4.7e-290 1000.7 594 81.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 6.1e-290 1000.3 600 80.8
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 7.9e-290 1000.0 594 81.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.9e-290 1000.0 601 81.0
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.0e-289 999.6 594 81.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.8e-289 998.8 600 80.7
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.9e-289 997.7 601 81.0
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.9e-289 997.7 581 82.8
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 3.3e-288 994.6 594 79.8
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.3e-288 994.6 581 82.6
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 4.4e-288 994.2 596 80.9
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 7.4e-288 993.4 601 80.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.4e-288 993.4 590 81.5
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 6.3e-287 990.3 587 80.9
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 6.3e-287 990.3 590 81.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 8.2e-287 989.9 601 80.5
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.1e-286 989.6 593 80.6
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.1e-286 989.6 605 80.2
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.1e-286 989.6 592 80.7
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.4e-286 989.2 594 79.6
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.8e-286 988.8 597 79.6
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.4e-286 988.4 581 82.4
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 3.1e-286 988.0 601 80.0
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 3.1e-286 988.0 594 78.8
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 5.3e-286 987.3 601 80.5
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 5.3e-286 987.3 594 80.5
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 7.0e-286 986.9 606 79.9
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.2e-285 986.1 601 80.2
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 1.6e-285 985.7 594 79.1
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 2.6e-285 984.9 605 80.2
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 7.7e-285 983.4 600 79.8
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.7e-284 982.2 581 81.8
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.7e-284 982.2 590 81.2
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 2.2e-284 981.9 600 79.8
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 3.8e-284 981.1 581 81.6
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.9e-283 978.8 580 81.2
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.1e-282 973.8 592 80.1
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.0e-281 973.0 583 79.9
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 2.3e-281 971.8 582 80.2
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.3e-279 966.1 581 79.2
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 6.3e-279 963.8 600 78.0
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.1e-278 963.0 600 77.8
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.4e-278 962.6 591 79.4
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.1e-278 961.1 597 78.2
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 7.0e-278 960.3 598 78.3
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 9.1e-278 959.9 579 78.4
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 3.5e-277 958.0 579 78.8
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 4.5e-277 957.6 579 78.6
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.9e-277 957.2 585 78.5
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.3e-276 956.1 579 78.6
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 3.8e-276 954.5 579 78.4
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 6.5e-276 953.7 579 78.2
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 8.5e-276 953.4 579 78.4
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 4.2e-275 951.0 579 78.2
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 2.7e-274 948.3 579 78.2
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 3.6e-274 948.0 599 76.1
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.6e-274 948.0 581 78.7
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 6.1e-274 947.2 573 78.9
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.4e-273 946.0 581 78.5
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 3.0e-273 944.9 559 82.3
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 3.0e-273 944.9 595 77.1
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 6.8e-273 943.7 579 77.2
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.2e-272 943.0 573 78.7
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 2.2e-271 938.7 581 77.8
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.4e-270 936.0 580 77.2
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 3.1e-270 934.9 597 74.4
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 1.6e-269 932.6 581 77.3
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 2.0e-269 932.2 573 78.5
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.3e-268 928.7 576 77.4
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 3.8e-268 927.9 587 76.0
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 8.6e-268 926.8 598 74.9
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.5e-267 923.3 598 74.6
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.6e-266 921.4 588 76.2
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 3.6e-266 921.4 583 76.7
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 2.3e-265 918.7 579 78.1
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.2e-263 912.1 602 75.9
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.4e-262 908.7 605 74.9
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 7.8e-261 903.7 579 75.8
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 8.6e-260 900.2 598 75.9
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.4e-256 887.9 597 73.2
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 6.6e-252 874.0 600 72.3
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.3e-251 871.3 571 73.4
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.6e-251 870.9 571 73.4
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 6.8e-249 864.0 586 70.3
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 5.8e-248 860.9 524 79.0
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 7.0e-246 854.0 579 71.2
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 2.8e-242 842.0 583 70.5
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 8.9e-241 837.0 589 71.6
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 2.6e-240 835.5 576 70.1
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 4.9e-239 831.2 485 84.3
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.9e-238 829.3 600 71.7
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 2.1e-234 815.8 578 67.8
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 6.2e-234 814.3 581 69.2
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 3.1e-233 812.0 600 69.8
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 6.2e-226 787.7 536 72.0
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 4.6e-221 771.5 579 64.9
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.6e-218 763.1 454 81.7
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.4e-217 760.0 453 81.7
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 5.3e-217 758.1 572 63.6
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 2.4e-214 749.2 571 62.3
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.4e-208 728.8 582 62.4
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 2.1e-205 719.5 606 63.5
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 4.3e-203 711.8 585 60.2
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.6e-203 711.4 568 63.4
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.6e-203 711.4 568 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 6.5e-199 698.0 567 60.1
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.1e-165 586.6 600 57.2
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 8.2e-162 574.7 364 76.9
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 8.2e-162 574.7 360 78.6
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 5.6e-142 508.8 322 77.6
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 3.7e-138 496.1 576 46.9
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 7.3e-134 481.9 321 71.7
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.4e-129 467.6 339 69.6
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 5.8e-123 445.7 343 66.2
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 7.4e-94 349.0 229 74.7
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.3e-89 332.0 531 42.7
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.0e-70 271.2 186 66.1
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.7e-69 268.1 336 45.5
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.6e-62 244.2 133 88.7
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 2.2e-53 214.5 169 66.3
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 4.1e-52 210.3 129 75.2
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-51 208.8 126 77.8
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.6e-51 208.4 137 70.8
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.9e-49 201.4 129 71.3
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 7.2e-49 199.5 127 72.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 7.2e-49 199.5 127 72.4
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 5.2e-47 193.4 109 74.3
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 7.5e-46 189.5 120 71.7
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 7.5e-46 189.5 120 71.7
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 5.4e-44 183.3 119 70.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 5.4e-44 183.3 119 70.6
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-43 182.2 115 74.8
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 3.6e-40 170.6 95 78.9
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.2e-33 147.1 73 90.4
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.5e-30 138.7 79 83.5
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.3e-25 120.9 86 69.8
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 1.4e-23 115.5 118 47.5
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 5.2e-23 113.6 121 47.9
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 6.8e-23 113.2 194 41.2
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.9e-20 105.1 60 80.0
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 6.0e-19 100.1 63 74.6


User provided reference genes

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