Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C92G16 Lonicera japonica HOM05D000902 ORTHO05D013400 5.0e-102 374.8 239 100.0
Dinv11201 Davidia involucrata HOM05D000902 ORTHO05D000832 4.6e-39 165.6 193 56.0
Dinv23182 Davidia involucrata HOM05D000902 ORTHO05D000832 6.2e-36 155.2 192 54.2
TAR629G3413 Trochodendron aralioides HOM05D000902 ORTHO05D000832 4.0e-35 152.5 126 69.0
CSS0007487 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 6.9e-35 151.8 196 52.0
TAR371G0242 Trochodendron aralioides HOM05D000902 ORTHO05D000832 2.9e-33 146.4 193 52.3
Cc04_g09610 Coffea canephora HOM05D000902 ORTHO05D000832 1.8e-30 137.1 192 50.0
Actinidia08888 Actinidia chinensis HOM05D000902 ORTHO05D000832 2.5e-29 133.3 172 48.3
GSVIVG01008587001 Vitis vinifera HOM05D000902 ORTHO05D000832 5.6e-29 132.1 250 40.0
arahy.Tifrunner.gnm1.ann1.LR2QKH Arachis hypogaea HOM05D000902 ORTHO05D000832 9.0e-27 124.8 175 49.7
Ca_17571_v3 Cicer arietinum L. HOM05D000902 ORTHO05D000832 9.0e-27 124.8 129 59.7
arahy.Tifrunner.gnm1.ann1.Q161UF Arachis hypogaea HOM05D000902 ORTHO05D000832 1.2e-26 124.4 174 49.4
Migut.I00561 Erythranthe guttata HOM05D000902 ORTHO05D000832 3.4e-26 122.9 172 50.6
Lalb_Chr13g0297161 Lupinus albus HOM05D000902 ORTHO05D000832 7.6e-26 121.7 183 44.8
TWI14G0729 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 1.3e-25 120.9 183 49.2
Duzib205G1670 Durio zibethinus HOM05D000902 ORTHO05D000832 1.7e-25 120.6 175 46.9
Peaxi162Scf00516g00215 Petunia axillaris HOM05D000902 ORTHO05D000832 1.7e-25 120.6 198 44.9
CANSAT80G0625 Cannabis sativa HOM05D000902 ORTHO05D000832 2.2e-25 120.2 151 50.3
Lj4g0027865 Lotus japonicus HOM05D000902 ORTHO05D000832 3.8e-25 119.4 175 45.7
Manes.14G048300 Manihot esculenta HOM05D000902 ORTHO05D000832 3.8e-25 119.4 176 48.9
Lsat_1_v5_gn_5_10920 Lactuca sativa HOM05D000902 ORTHO05D000832 1.1e-24 117.9 175 46.3
Glyma.08G010300 Glycine max HOM05D000902 ORTHO05D000832 2.4e-24 116.7 173 45.1
Gohir.A12G191700 Gossypium hirsutum HOM05D000902 ORTHO05D000832 2.4e-24 116.7 106 65.1
ECA246G0932 Erigeron canadensis HOM05D000902 ORTHO05D000832 7.1e-24 115.2 149 46.3
SalBow5G4873 Salvia bowleyana HOM05D000902 ORTHO05D000832 7.1e-24 115.2 109 61.5
Sed0001603 Sechium edule HOM05D000902 ORTHO05D000832 7.1e-24 115.2 125 58.4
Atru.chr6.1870 Acer truncatum HOM05D000902 ORTHO05D000832 1.2e-23 114.4 191 43.5
Rhsim08G0193200 Rhododendron simsii HOM05D000902 ORTHO05D000832 1.6e-23 114.0 147 50.3
Cpa.g.sc4.155 Carica papaya HOM05D000902 ORTHO05D000832 4.6e-23 112.5 252 39.3
Hund10108 Selenicereus undatus HOM05D000902 ORTHO05D000832 6.0e-23 112.1 162 47.5
Gohir.D12G194050 Gossypium hirsutum HOM05D000902 ORTHO05D000832 1.0e-22 111.3 173 47.4
Ciclev10030712m.g Citrus clementina HOM05D000902 ORTHO05D000832 1.3e-22 110.9 198 41.9
SGA_v2.0_scaffold188G40336 Striga asiatica HOM05D000902 ORTHO05D000832 1.3e-22 110.9 174 44.3
Prupe.5G147000 Prunus persica HOM05D000902 ORTHO05D000832 1.8e-22 110.5 180 43.9
Cfa018751 Carpinus fangiana HOM05D000902 ORTHO05D000832 2.3e-22 110.2 121 53.7
QL10p001889 Quercus lobata HOM05D000902 ORTHO05D000832 2.3e-22 110.2 188 41.5
CsaV3_1G000340 Cucumis sativus L. HOM05D000902 ORTHO05D000832 5.1e-22 109.0 126 57.1
Oeu048892.2 Olea europaea HOM05D000902 ORTHO05D013400 5.1e-22 109.0 181 45.9
TPR.G559 Trifolium pratense HOM05D000902 ORTHO05D013400 5.1e-22 109.0 119 58.0
Gohir.A07G048600 Gossypium hirsutum HOM05D000902 ORTHO05D000832 6.7e-22 108.6 106 61.3
Gohir.D07G052900 Gossypium hirsutum HOM05D000902 ORTHO05D000832 6.7e-22 108.6 106 61.3
Gorai.001G055900 Gossypium raimondii HOM05D000902 ORTHO05D000832 6.7e-22 108.6 106 61.3
Thecc.03G134800 Theobroma cacao HOM05D000902 ORTHO05D000832 6.7e-22 108.6 171 48.5
MELO3C026187.2 Cucumis melo HOM05D000902 ORTHO05D000832 8.7e-22 108.2 126 56.3
Medtr8g096410 Medicago truncatula HOM05D000902 ORTHO05D000832 8.7e-22 108.2 163 47.9
SGA_v2.0_scaffold40G15576 Striga asiatica HOM05D000902 ORTHO05D000832 8.7e-22 108.2 177 43.5
Lj9A482G21 Lonicera japonica HOM05D000902 ORTHO05D000832 1.1e-21 107.8 253 38.7
Phvul.002G284600 Phaseolus vulgaris HOM05D000902 ORTHO05D000832 1.1e-21 107.8 168 45.8
Psat7g037320 Pisum sativum HOM05D000902 ORTHO05D000832 1.5e-21 107.5 165 45.5
Hund02463 Selenicereus undatus HOM05D000902 ORTHO05D000832 1.5e-21 107.5 126 54.0
Haze_07183 Corylus avellana HOM05D000902 ORTHO05D000832 3.3e-21 106.3 117 54.7
Solyc03g097520.3 Solanum lycopersicum HOM05D000902 ORTHO05D000832 3.3e-21 106.3 190 42.6
Nn4g22232 Nelumbo nucifera HOM05D000902 ORTHO05D000832 4.3e-21 105.9 170 46.5
ECA247G2079 Erigeron canadensis HOM05D000902 ORTHO05D000832 5.6e-21 105.5 183 42.6
Hma1.2p1_0168F.1_g074340 Hydrangea macrophylla HOM05D000902 ORTHO05D000832 1.3e-20 104.4 170 45.9
Gorai.008G208700 Gossypium raimondii HOM05D000902 ORTHO05D000832 2.8e-20 103.2 135 52.6
vmacro16731 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 2.8e-20 103.2 229 38.9
Actinidia18333 Actinidia chinensis HOM05D000902 ORTHO05D013400 3.7e-20 102.8 119 55.5
Eucgr.K02700 Eucalyptus grandis HOM05D000902 ORTHO05D000832 3.7e-20 102.8 164 43.9
Potri.015G100900 Populus trichocarpa HOM05D000902 ORTHO05D000832 3.7e-20 102.8 197 42.1
Rhsim12G0177700 Rhododendron simsii HOM05D000902 ORTHO05D000832 4.8e-20 102.4 107 57.9
CSS0044547 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 1.1e-19 101.3 169 43.2
Sabra15G0121300 Salix brachista HOM05D000902 ORTHO05D000832 1.1e-19 101.3 156 48.1
VMungo0251G1748 Vigna mungo HOM05D000902 ORTHO05D000832 1.1e-19 101.3 97 59.8
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.4e-19 100.9 155 45.2
Hma1.2p1_0275F.1_g110510 Hydrangea macrophylla HOM05D000902 ORTHO05D000832 3.1e-19 99.8 167 41.3
RcHm_v2.0_Chr7g0189451 Rosa chinensis HOM05D000902 ORTHO05D000832 3.1e-19 99.8 183 39.3
Actinidia30615 Actinidia chinensis HOM05D000902 ORTHO05D000832 4.0e-19 99.4 91 63.7
Nn3g16371 Nelumbo nucifera HOM05D000902 ORTHO05D000832 9.0e-19 98.2 190 44.7
SalBow5G5702 Salvia bowleyana HOM05D000167 ORTHO05D000994 9.0e-19 98.2 93 62.4
PGR044G2719 Punica granatum HOM05D000902 ORTHO05D000832 1.5e-18 97.4 181 38.7
Glyma.05G202900 Glycine max HOM05D000902 ORTHO05D000832 2.0e-18 97.1 161 44.7
PSO478G4515 Papaver somniferum HOM05D000902 ORTHO05D000832 2.0e-18 97.1 110 56.4
Aqoxy5G03251 Aquilegia oxysepala HOM05D000902 ORTHO05D000832 7.6e-18 95.1 117 54.7
Lj3C1074T6 Lonicera japonica HOM05D000902 ORTHO05D000832 1.0e-17 94.7 123 45.5
PSO017G5166 Papaver somniferum HOM05D000902 ORTHO05D000832 1.0e-17 94.7 110 54.5
MBI11_g13057_MAGBIO Magnolia biondii HOM05D000902 ORTHO05D000832 1.3e-17 94.4 160 45.0
PSO017G1274 Papaver somniferum HOM05D000902 ORTHO05D000832 1.7e-17 94.0 110 54.5
HanXRQChr10g0310741 Helianthus annuus HOM05D000902 ORTHO05D000832 1.4e-16 90.9 190 35.8
MD14G1151900 Malus domestica HOM05D000902 ORTHO05D000832 2.5e-16 90.1 174 42.0
EL10Ac5g11361 Beta vulgaris HOM05D000902 ORTHO05D000832 5.5e-16 89.0 214 38.8
DCAR_013057 Daucus carota HOM05D000902 ORTHO05D000832 5.5e-16 89.0 180 37.2
DCAR_020743 Daucus carota HOM05D000902 ORTHO05D000832 7.1e-16 88.6 127 49.6
AUR62038832 Chenopodium quinoa HOM05D000902 ORTHO05D000832 1.2e-15 87.8 79 67.1
AUR62028886 Chenopodium quinoa HOM05D000902 ORTHO05D000832 2.1e-15 87.0 135 42.2
MBI07_g24742_MAGBIO Magnolia biondii HOM05D000902 ORTHO05D000832 2.1e-15 87.0 205 41.5
AUR62029563 Chenopodium quinoa HOM05D000902 ORTHO05D000832 6.0e-15 85.5 79 65.8
FAN13G2951 Fragaria x ananassa HOM05D000902 ORTHO05D000832 6.0e-15 85.5 182 36.3
Atru.chr12.2337 Acer truncatum HOM05D000902 ORTHO05D000832 1.0e-14 84.7 171 41.5
FvH4_5g08810 Fragaria vesca HOM05D000902 ORTHO05D000832 1.0e-14 84.7 182 36.8
CSS0008066 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 1.3e-14 84.3 273 34.1
AT5G50780 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 1.8e-14 84.0 95 55.8
BcaNung03985 Brassica carinata HOM05D000902 ORTHO05D000832 1.8e-14 84.0 76 60.5
AL8G24940 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 3.0e-14 83.2 98 53.1
A01p16260 Brassica napus HOM05D000902 ORTHO05D000832 3.0e-14 83.2 76 60.5
FAN04G2273 Fragaria x ananassa HOM05D000902 ORTHO05D000832 3.0e-14 83.2 182 35.7
FAN18G1525 Fragaria x ananassa HOM05D000902 ORTHO05D000832 3.0e-14 83.2 182 36.3
HanXRQChr08g0236501 Helianthus annuus HOM05D000902 ORTHO05D000832 3.0e-14 83.2 171 40.4
vmacro19142 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 3.0e-14 83.2 125 43.2
BcaC09g50827 Brassica carinata HOM05D000902 ORTHO05D000832 5.1e-14 82.4 76 60.5
C01p20260 Brassica napus HOM05D000902 ORTHO05D000832 5.1e-14 82.4 76 60.5
BolC1t01956H Brassica oleracea HOM05D000902 ORTHO05D000832 5.1e-14 82.4 76 60.5
BolC3t14334H Brassica oleracea HOM05D000902 ORTHO05D000832 5.1e-14 82.4 104 50.0
BraA01t01563Z Brassica rapa HOM05D000902 ORTHO05D000832 5.1e-14 82.4 76 60.5
Lsat_1_v5_gn_4_2120 Lactuca sativa HOM05D000902 ORTHO05D000832 8.7e-14 81.6 99 50.5
unitig_26.g9288 Utricularia gibba HOM05D000396 ORTHO05D001816 8.7e-14 81.6 159 38.4
AUR62005667 Chenopodium quinoa HOM05D000902 ORTHO05D000832 1.5e-13 80.9 128 43.0
Sp7g22960 Schrenkiella parvula HOM05D000902 ORTHO05D000832 1.9e-13 80.5 76 57.9
EL10Ac6g13553 Beta vulgaris HOM05D000902 ORTHO05D000832 2.5e-13 80.1 158 38.6
CiPaw.05G105600 Carya illinoinensis HOM05D000902 ORTHO05D000832 4.3e-13 79.3 129 42.6
Rhsim12G0022900 Rhododendron simsii HOM05D000902 ORTHO05D000832 4.3e-13 79.3 165 37.6
TWI18G0596 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 4.3e-13 79.3 99 51.5
A03p16600 Brassica napus HOM05D000902 ORTHO05D000832 7.4e-13 78.6 104 49.0
BraA03t10947Z Brassica rapa HOM05D000902 ORTHO05D000832 7.4e-13 78.6 104 49.0
AL7G28220 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 1.3e-12 77.8 76 57.9
Carub.0007s1608 Capsella rubella HOM05D000902 ORTHO05D000832 2.2e-12 77.0 76 56.6
TWI39G0780 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 2.2e-12 77.0 147 38.8
Zm00001eb086500 Zea mays HOM05D000902 ORTHO05D000832 2.2e-12 77.0 105 47.6
CAN.G732.2 Capsicum annuum HOM05D000902 ORTHO05D000832 3.7e-12 76.3 129 43.4
SalBow2G0642 Salvia bowleyana HOM05D000902 ORTHO05D000832 3.7e-12 76.3 76 56.6
ClCG06G018110 Citrullus lanatus HOM05D000902 ORTHO05D000832 4.8e-12 75.9 132 47.0
Thhalv10024553m.g Eutrema salsugineum HOM05D000902 ORTHO05D000832 4.8e-12 75.9 76 56.6
AT4G24970 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 6.3e-12 75.5 76 53.9
BcaB05g24035 Brassica carinata HOM05D000902 ORTHO05D000832 6.3e-12 75.5 106 50.0
BcaNung03989 Brassica carinata HOM05D000902 ORTHO05D000832 6.3e-12 75.5 76 56.6
BcaC06g32845 Brassica carinata HOM05D000902 ORTHO05D000832 1.1e-11 74.7 76 55.3
Oeu023501.1 Olea europaea HOM05D000902 ORTHO05D000832 1.1e-11 74.7 66 66.7
Aa31LG7G10770 Aethionema arabicum HOM05D000902 ORTHO05D000832 1.4e-11 74.3 76 55.3
MD06G1137200 Malus domestica HOM05D000902 ORTHO05D000832 1.8e-11 73.9 130 42.3
CARHR232370 Cardamine hirsuta HOM05D000902 ORTHO05D000832 2.4e-11 73.6 76 55.3
CDE05G3380 Ceratophyllum demersum HOM05D000902 ORTHO05D013400 5.3e-11 72.4 101 48.5
QL03p051148 Quercus lobata HOM05D000902 ORTHO05D000832 5.3e-11 72.4 124 41.1
Cfa009402 Carpinus fangiana HOM05D000902 ORTHO05D000832 1.2e-10 71.2 123 42.3
Sp6g12880 Schrenkiella parvula HOM05D000902 ORTHO05D000832 1.5e-10 70.9 104 47.1
Haze_12461 Corylus avellana HOM05D000902 ORTHO05D000832 2.0e-10 70.5 108 45.4
C03p19530 Brassica napus HOM05D000902 ORTHO05D000832 2.6e-10 70.1 92 50.0
Carub.0008s1068 Capsella rubella HOM05D000902 ORTHO05D000832 2.6e-10 70.1 98 48.0
Sopen03g028280 Solanum pennellii HOM05D000902 ORTHO05D000832 2.6e-10 70.1 190 34.7
Nitab4.5_0003383g0040 Nicotiana tabacum HOM05D000902 ORTHO05D000832 3.4e-10 69.7 128 39.1
Ah.11g046390 Amaranthus hybridus HOM05D000902 ORTHO05D000832 4.5e-10 69.3 87 54.0
PSO210G7397 Papaver somniferum HOM05D000902 ORTHO05D000832 5.9e-10 68.9 112 42.9
A03p55660 Brassica napus HOM05D000902 ORTHO05D000832 7.7e-10 68.6 76 52.6
Prupe.1G221200 Prunus persica HOM05D000902 ORTHO05D000832 7.7e-10 68.6 173 35.8
Gohir.D12G145575 Gossypium hirsutum HOM05D000902 ORTHO05D013400 1.3e-09 67.8 103 43.7
Rhsim12G0177100 Rhododendron simsii HOM05D048284 ORTHO05D013400 1.7e-09 67.4 91 50.5
Actinidia25552 Actinidia chinensis HOM05D000902 ORTHO05D000832 2.2e-09 67.0 179 35.8
PSO455G0180 Papaver somniferum HOM05D000902 ORTHO05D000832 2.9e-09 66.6 68 61.8
Gohir.D12G145725 Gossypium hirsutum HOM05D000902 ORTHO05D013400 6.5e-09 65.5 149 36.9
MD17G1068200 Malus domestica HOM05D000902 ORTHO05D000832 6.5e-09 65.5 176 31.8
MD17G1068600 Malus domestica HOM05D000902 ORTHO05D000832 6.5e-09 65.5 176 31.8
GSVIVG01000977001 Vitis vinifera HOM05D000902 ORTHO05D000832 8.5e-09 65.1 71 57.7
C07p53900 Brassica napus HOM05D000902 ORTHO05D000832 1.1e-08 64.7 76 50.0
BolC7t45880H Brassica oleracea HOM05D000902 ORTHO05D000832 1.1e-08 64.7 76 50.0
Os02g0469300 Oryza sativa ssp. japonica HOM05D000902 ORTHO05D000832 1.1e-08 64.7 98 44.9
ECA234G1607 Erigeron canadensis HOM05D000902 ORTHO05D000832 1.9e-08 63.9 119 43.7
PSO170G5005 Papaver somniferum HOM05D000902 ORTHO05D000832 1.9e-08 63.9 68 57.4
Thhalv10012707m.g Eutrema salsugineum HOM05D000902 ORTHO05D000832 2.5e-08 63.5 96 45.8
FAN17G0201 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.5e-08 63.5 86 46.5
CAN.G373.2 Capsicum annuum HOM05D000902 ORTHO05D000832 4.2e-08 62.8 98 46.9
Eucgr.B03533 Eucalyptus grandis HOM05D000902 ORTHO05D000832 5.5e-08 62.4 107 39.3
HanXRQChr02g0034131 Helianthus annuus HOM05D000902 ORTHO05D000832 7.2e-08 62.0 120 35.8
Gohir.A12G140900 Gossypium hirsutum HOM05D000902 ORTHO05D013400 9.4e-08 61.6 75 46.7
Lsat_1_v5_gn_1_32721 Lactuca sativa HOM05D000902 ORTHO05D000832 1.6e-07 60.8 179 33.0
MD13G1123700 Malus domestica HOM05D000902 ORTHO05D000832 2.1e-07 60.5 156 33.3
FAN07G0834 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.7e-07 60.1 86 45.3
Os04g0311100 Oryza sativa ssp. japonica HOM05D000902 ORTHO05D013400 2.7e-07 60.1 61 59.0
HPP92_009797 Vanilla planifolia HOM05D000902 ORTHO05D013400 2.7e-07 60.1 90 45.6
Aa31LG3G7110 Aethionema arabicum HOM05D000902 ORTHO05D013400 3.6e-07 59.7 105 41.0
Atru.chr11.2382 Acer truncatum HOM05D000902 ORTHO05D000832 3.0e-06 56.6 171 34.5
FvH4_4g23220 Fragaria vesca HOM05D000902 ORTHO05D000832 3.0e-06 56.6 153 35.9
Zm00001eb203130 Zea mays HOM05D000902 ORTHO05D000832 3.0e-06 56.6 166 31.9
Sc22g0003650 Simmondsia chinensis HOM05D000902 ORTHO05D000832 3.9e-06 56.2 107 36.4


User provided reference genes

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