Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 8.7e-122 440.3 215 100.0
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.2e-25 120.9 129 51.9
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.1e-22 110.2 118 52.5
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.8e-22 108.2 136 47.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.3e-21 106.7 136 47.8
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.9e-21 105.9 127 48.8
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 8.7e-21 104.8 129 47.3
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.3e-19 100.9 110 51.8
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.3e-19 100.9 123 51.2
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.1e-19 100.1 121 47.1
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.6e-19 99.4 129 45.7
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 8.1e-19 98.2 75 61.3
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.1e-18 97.8 134 44.0
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.4e-18 97.4 73 63.0
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.4e-18 97.4 108 46.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 5.3e-18 95.5 118 45.8
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 9.0e-18 94.7 119 46.2
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.2e-17 94.4 74 60.8
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.5e-17 94.0 108 44.4
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.0e-17 93.6 118 45.8
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.0e-17 93.6 118 45.8
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 2.6e-17 93.2 120 45.8
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 3.4e-17 92.8 120 48.3
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 4.5e-17 92.4 73 58.9
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.5e-17 92.4 120 45.8
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.5e-17 92.4 118 47.5
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 4.5e-17 92.4 119 45.4
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 9.9e-17 91.3 71 62.0
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-16 90.9 71 63.4
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.3e-16 90.9 73 56.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.7e-16 90.5 122 41.0
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.2e-16 90.1 118 47.5
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.9e-16 89.7 92 50.0
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.9e-16 89.7 132 43.2
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 3.8e-16 89.4 119 41.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 8.4e-16 88.2 117 43.6
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 8.4e-16 88.2 91 51.6
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 8.4e-16 88.2 131 35.9
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 8.4e-16 88.2 71 57.7
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 8.4e-16 88.2 119 46.2
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.9e-15 87.0 71 57.7
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.9e-15 87.0 124 41.1
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.4e-15 86.7 118 44.1
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 2.4e-15 86.7 79 50.6
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 4.2e-15 85.9 109 45.9
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 5.4e-15 85.5 137 36.5
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 5.4e-15 85.5 81 50.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 7.1e-15 85.1 119 39.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 7.1e-15 85.1 119 41.2
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.1e-15 85.1 81 44.4
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 9.3e-15 84.7 119 39.5
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 9.3e-15 84.7 115 44.3
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-14 84.3 103 47.6
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-14 84.3 103 47.6
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.2e-14 84.3 93 50.5
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.6e-14 84.0 136 42.6
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.1e-14 83.6 107 43.9
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.1e-14 83.6 99 44.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.7e-14 83.2 119 37.8
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.7e-14 83.2 119 39.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.5e-14 82.8 67 59.7
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.5e-14 82.8 102 45.1
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 4.6e-14 82.4 90 47.8
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.0e-13 81.3 99 43.4
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.3e-13 80.9 108 46.3
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.8e-13 80.5 99 45.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.8e-13 80.5 122 39.3
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.3e-13 80.1 131 41.2
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.9e-13 79.3 91 40.7
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 3.9e-13 79.3 100 42.0
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 6.7e-13 78.6 105 41.0
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 6.7e-13 78.6 120 38.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 8.7e-13 78.2 108 42.6
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.1e-12 77.8 118 44.9
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.9e-12 77.0 105 40.0
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.5e-12 76.6 90 50.0
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.5e-12 76.6 91 46.2
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 4.3e-12 75.9 120 38.3
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 7.4e-12 75.1 105 39.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 7.4e-12 75.1 103 41.7
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 7.4e-12 75.1 103 42.7
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.4e-12 75.1 72 47.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 2.8e-11 73.2 114 36.0
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.8e-11 73.2 94 42.6
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 4.8e-11 72.4 103 40.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 4.8e-11 72.4 119 37.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 4.8e-11 72.4 72 45.8
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.1e-11 71.6 71 45.1
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 3.1e-10 69.7 119 35.3
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.6e-09 66.6 141 31.9
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.4e-09 66.2 109 36.7
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 7.6e-09 65.1 120 35.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 7.6e-09 65.1 134 32.1
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 7.6e-09 65.1 134 32.1
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 9.9e-09 64.7 120 33.3
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.3e-08 64.3 133 32.3
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.7e-08 63.9 108 36.1
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.2e-08 63.5 87 41.4
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.8e-08 62.8 70 40.0
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 3.8e-08 62.8 149 30.2
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.8e-08 62.8 75 40.0
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.8e-08 62.8 66 43.9
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 4.9e-08 62.4 119 34.5
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 4.9e-08 62.4 120 32.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 8.4e-08 61.6 109 33.9
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.4e-07 60.1 71 40.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.4e-07 60.1 88 36.4
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.2e-07 59.7 120 32.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.2e-07 59.7 70 38.6
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 4.2e-07 59.3 120 32.5
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 4.2e-07 59.3 119 30.3
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 7.1e-07 58.5 119 31.1
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 7.1e-07 58.5 70 38.6
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 9.3e-07 58.2 118 33.1
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.2e-06 57.8 68 39.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.1e-06 57.0 119 30.3
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.1e-06 57.0 119 32.8
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 4.6e-06 55.8 122 29.5
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.0e-06 55.5 71 36.6


User provided reference genes

Program Settings