Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 3.5e-161 571.6 297 100.0
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 3.8e-51 206.1 203 54.2
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 6.5e-51 205.3 201 53.7
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 6.5e-51 205.3 206 53.9
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.9e-50 203.8 202 53.5
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.5e-50 203.4 219 51.1
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 3.2e-50 203.0 203 52.2
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 9.4e-50 201.4 206 52.4
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 9.4e-50 201.4 199 53.3
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.6e-49 200.7 204 53.9
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.6e-49 199.5 201 53.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.6e-49 199.5 201 52.7
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 3.6e-49 199.5 232 50.4
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.7e-49 199.1 219 49.8
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.7e-49 199.1 201 52.7
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.4e-48 197.6 223 49.8
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.4e-48 197.6 219 49.8
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.8e-48 197.2 219 49.3
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.8e-48 197.2 208 51.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.8e-48 197.2 208 51.0
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.3e-48 196.8 204 53.9
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 3.0e-48 196.4 204 53.4
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.0e-48 196.4 203 53.7
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 3.9e-48 196.1 193 53.9
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 8.8e-48 194.9 228 47.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.1e-47 194.5 202 50.5
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.1e-47 194.5 207 51.7
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.1e-47 194.5 201 53.7
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.5e-47 194.1 207 53.1
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.0e-47 193.7 194 51.5
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 2.6e-47 193.4 203 53.2
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 2.6e-47 193.4 207 51.2
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 3.3e-47 193.0 193 53.4
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 3.3e-47 193.0 208 51.0
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 4.4e-47 192.6 217 50.7
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 5.7e-47 192.2 194 52.1
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 7.4e-47 191.8 199 52.8
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 7.4e-47 191.8 204 53.4
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.3e-46 191.0 194 51.0
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.7e-46 190.7 193 52.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.7e-46 190.7 209 49.8
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.7e-46 190.7 195 52.8
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 2.2e-46 190.3 207 52.2
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.8e-46 189.9 194 50.5
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 3.7e-46 189.5 199 52.3
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 4.8e-46 189.1 204 48.5
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 6.3e-46 188.7 200 52.0
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 8.2e-46 188.3 201 52.2
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 8.2e-46 188.3 204 52.9
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.1e-45 188.0 202 51.0
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.4e-45 187.6 207 50.2
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.4e-45 187.6 203 51.7
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.8e-45 187.2 204 52.5
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.4e-45 186.8 204 52.5
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 2.4e-45 186.8 220 49.5
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 4.1e-45 186.0 220 48.6
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 5.3e-45 185.7 208 48.1
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 7.0e-45 185.3 193 51.8
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 7.0e-45 185.3 212 49.1
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-44 184.5 221 49.3
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.2e-44 184.5 217 48.4
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.6e-44 184.1 224 46.9
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.6e-44 184.1 203 49.8
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.0e-44 183.7 194 49.5
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.6e-44 183.3 194 50.0
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.5e-44 183.0 195 50.8
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.5e-44 183.0 204 52.0
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 4.5e-44 182.6 204 49.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 4.5e-44 182.6 208 48.1
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 5.9e-44 182.2 195 53.3
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 7.7e-44 181.8 180 53.3
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.3e-43 181.0 204 51.5
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 2.9e-43 179.9 203 49.8
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.9e-43 179.9 207 49.8
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 6.5e-43 178.7 210 48.1
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 6.5e-43 178.7 210 48.1
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 6.5e-43 178.7 203 49.3
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.1e-42 177.9 202 50.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.9e-42 177.2 201 45.8
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.9e-42 177.2 206 46.6
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 5.5e-42 175.6 201 46.3
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 9.4e-42 174.9 210 46.7
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.6e-41 174.1 206 46.1
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 8.0e-41 171.8 202 47.0
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.0e-40 171.4 200 48.5
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.0e-40 171.4 202 46.5
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.4e-40 171.0 194 46.4
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 3.0e-40 169.9 224 42.4
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 4.0e-40 169.5 209 45.5
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 4.0e-40 169.5 199 45.2
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 3.4e-39 166.4 202 46.5
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.3e-38 161.8 194 45.4
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.4e-37 161.0 192 46.9
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.6e-36 157.5 203 44.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.6e-36 157.5 202 44.6
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 2.0e-36 157.1 155 50.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.0e-36 157.1 194 45.9
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.7e-36 156.8 204 44.1
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.5e-36 156.0 203 46.3
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.3e-35 154.5 188 45.2
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.9e-35 153.3 186 45.2
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 5.0e-35 152.5 215 42.3
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 5.0e-35 152.5 200 44.5
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.1e-34 151.4 191 42.9
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.5e-34 150.2 204 44.1
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.5e-34 150.2 210 40.5
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 5.5e-34 149.1 189 43.9
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.1e-33 147.1 199 43.2
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 4.0e-32 142.9 146 51.4
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.6e-31 140.2 198 38.4
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.0e-28 130.6 128 53.9
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.0e-28 130.6 205 39.5
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 7.7e-28 128.6 179 44.7
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.3e-27 127.9 203 38.4
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.7e-27 127.5 166 43.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.9e-27 126.7 145 44.1
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 5.0e-27 125.9 208 37.5
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 6.6e-27 125.6 193 38.9
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 2.6e-23 113.6 194 35.6
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 4.5e-20 102.8 208 34.6
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 8.6e-19 98.6 200 36.0
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.6e-17 94.4 123 42.3
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 6.1e-17 92.4 98 50.0
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.0e-17 92.0 77 54.5
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 4.9e-14 82.8 85 51.8
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.1e-13 81.6 85 51.8
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 7.0e-13 79.0 74 58.1
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 6.0e-12 75.9 41 82.9
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.3e-10 69.7 40 80.0
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 4.3e-10 69.7 206 28.6
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 8.0e-09 65.5 44 70.5
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.9e-08 62.0 97 38.1
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.5e-07 61.2 38 68.4
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.5e-07 58.9 125 36.8
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.4e-06 55.8 48 56.2


User provided reference genes

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